| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4523 |
|---|
| Symbol | |
|---|
| ID | 6246043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | + |
|---|
| Start bp | 1573555 |
|---|
| End bp | 1575495 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642596275 |
|---|
| Product | selenocysteine-specific translation elongation factor |
|---|
| Protein accession | YP_001860682 |
|---|
| Protein GI | 186473340 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTCG GCACGGCTGG CCATATCGAC CACGGCAAGA CGACGCTGGT TCGTGCGCTG
ACGGGCATCG ACACCGACCG CCTGAAAGAA GAGAAGGCCC GCGGCATTTC GATCGAACTC
GGCTATGCGT ATGCGCCGCT CGCCAACGGC GACGTGCTTG GCATCATCGA CGTACCCGGT
CACGAAAAGC TCGTGCACAC GATGGCGGCG GGCGCTTGCG GCATCGACTA TGCGCTGCTC
GTGATTGCCG CCGACGACGG CATCATGCCG CAAACGCGCG AGCATCTTTC GATCCTGCAA
CTGCTCGGCG TCACGCGCGG CGCGATTGCA ATGACGAAGA TCGATCGCGT GGATACAGCG
CGAATCGCGC AGGTGCGCGA GGAAATTCGC GCGTGGCTTG CGCCGACGCC ATTCGTTGAC
GCGCCCATCT TCGAAACGAA CGCAACCGCT TCCGACGATT CCGGCGTTCG CGCTTTGTCT
CGTCACTTGA ATGACGTGGC TATCGCACGG CGCGCGCGGC GCGACGATGG GCTGTTCCGT
CTGGCCGTCG ATCGCGTGTT TACGCTGGCG GGGCAGGGCA CGATCGTAAC GGGCACGGTG
TTCGCCGGAC ACGTGACCAC GGGCGACACG TTGATGCTCG AACGGGGGCG GCAGGCAGTG
CGCGTGCGCA GCATTCACGC GCAAAACCGC GCAGCCGATG CGGGCCGCGC CGGCCAGCGC
TGCGCGTTGA ATCTCGCGGG CATCGACAAG GACGCGGCTT CGCGCGGCGA CTGGATCGTC
GACGCGCGGC TTGCGAAGTC GAGCGAACGG CTCGACGTCG AACTGACGCT GCTCGCGGAG
GTGGATATCA CCTTGCAACA CTGGGCGCCG CTGCATGTGC ACATCGGTAC GCTGCATCGC
GTGGCGCATG TTGCGCTGCT CGATGGCGAA AGGCTCGCTG CGGGACATAC GGCACGCGCG
CAACTGGTGT TCGATGCACC CGTTTGCGCG CTGTCCGGGG ACCGCTTTAT CGTGCGCACT
GCGCAGGCAA CGCGCACGGT TGGCGGCGGG CGCGTGCTCG ATCCGTTCGG GCCGCCGCGC
AAGCGCAGAA CCGCGGAACG GCGTGCCTGG CTCGATGCAT TGCAGAGCTG GCTCGACGCT
CGCCACCTGA GTCCGCTGCT CGAAGTAGCG CCGCGCGGCG TAGCGCGCTC GATGCTTATG
CAACTGACGG GCCTGCCCGC CGATGCGTTG CCGCTGCCCG CCGATGTCGA AACGATTGCG
CTGCACGGCA AGGATGCGGG CGATGCGATC GTCGTATTGC GCAAGCATTG GGCGCGTTTG
CGATCGGGCG TGATTGCAGC ACTCGATCAA TATCACGCAC GCTCGCCGGA TGAACCCGGC
CCGGATGCGT CGCGTTTGCG GCGTATTGCG GCGCCGCTGG TGCCGGACGC CATGTGGCGC
GCGCTGATCG ATTCGCTCGT CGTTGAAGGG ACTGTTGCGA GGAGCGGGCC GTGGCTGCAT
TTGCCGGGAC ATTCGGTGTC GCTCGATTCG AACGAGCAGC GTATCGCCGC TGCTTTGCTG
CCGCTGCTCG TGGCGGGCCG CTTCGATCCG CCGTGGGTGC GCGATCTCGC GAAGTCGACG
GGGCAGCAGG ACGAGGCCGT GCGTCAGGTG TTGCGCAAGC TCGCGCGACA GGGCAGCGTC
TATCAGGTGG TTCGCGATCT GTTCTATGCG CGCGACGTGG TGCATGAACT CGCGCGGCTC
GTCGCTGGCA TCGCGAACGA GCAGGGCGGC GCGTTAGGCG CGTCGGCGTT TCGGGATGCG
ACCGGGTTGG GACGCAAGCG CGCGATTCAA ATTCTCGAGT GCTTCGATCG CATCGGCTAT
ACGCGGTTTC AACGTGACCT TCACTGGCTT AGGCCCGATT CGCAGTTGCA TGAAGCGGTG
GCGTGCGAAG CGGGTTCGTA A
|
|---|
| Protein sequence | MIVGTAGHID HGKTTLVRAL TGIDTDRLKE EKARGISIEL GYAYAPLANG DVLGIIDVPG
HEKLVHTMAA GACGIDYALL VIAADDGIMP QTREHLSILQ LLGVTRGAIA MTKIDRVDTA
RIAQVREEIR AWLAPTPFVD APIFETNATA SDDSGVRALS RHLNDVAIAR RARRDDGLFR
LAVDRVFTLA GQGTIVTGTV FAGHVTTGDT LMLERGRQAV RVRSIHAQNR AADAGRAGQR
CALNLAGIDK DAASRGDWIV DARLAKSSER LDVELTLLAE VDITLQHWAP LHVHIGTLHR
VAHVALLDGE RLAAGHTARA QLVFDAPVCA LSGDRFIVRT AQATRTVGGG RVLDPFGPPR
KRRTAERRAW LDALQSWLDA RHLSPLLEVA PRGVARSMLM QLTGLPADAL PLPADVETIA
LHGKDAGDAI VVLRKHWARL RSGVIAALDQ YHARSPDEPG PDASRLRRIA APLVPDAMWR
ALIDSLVVEG TVARSGPWLH LPGHSVSLDS NEQRIAAALL PLLVAGRFDP PWVRDLAKST
GQQDEAVRQV LRKLARQGSV YQVVRDLFYA RDVVHELARL VAGIANEQGG ALGASAFRDA
TGLGRKRAIQ ILECFDRIGY TRFQRDLHWL RPDSQLHEAV ACEAGS
|
|---|
| |