| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4400 |
|---|
| Symbol | |
|---|
| ID | 6245921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 1439336 |
|---|
| End bp | 1440187 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642596153 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001860560 |
|---|
| Protein GI | 186473218 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.0446216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTGC TCGACCTCGA TGCTGTGCGC GCGTTCGTAC TCGTCGCCGA CCTGCGCAGC
TTCACGCGCG CCGCCGATGC GCTCGACACC ACGCAATCCG CCGTCAGCCT GAAGCTGAAG
CGGCTGGAAG CGCACATCGG CAAGCAGTTG CTGGAGCGCA CGCCGCGCGT GGTGCGGCTG
TCGGCGGATG GCGAGGCGTT TCTCGACGGC GCGCGCAACC TGTTAGGCGC GCACGACCGG
GCGCTCGGCG CGTTATCGGC TCAGAAGCGG CGGCTCGTGC TGGGTTTGAG CGAGCACGTG
GCGGGAGCCG ACCTCGCTGC ACTGCTCGCG CGCGTGAATG CGCACGATCC CGCGCTGGTG
CTGGAACTGC ACATGGGATC GTCGGTGCCG CTGTTGCAGC AGTTCGACGA ACGGCGGCTC
GACGCCGTGG TTGTGCGCTA TGAACCGGAC GAGGTGCCGC GCGACGACGG CCAGCTGCTC
TTCACCGAAC CATTGTCATG GCTCGCGAGG CCCGACTGGC AGCCGCGCGC GGGCGAGCCT
TTGCCGCTCG CGCTGCTCGC CGCGCCTTGC AACGTGCGCT CGGTTGCGCT GCGTACGCTG
GACGGTGCGG GCATCGCGTG GCGCGAGGCG TTCATCGGCG GTGGCGTGCA GGCTGTGGGC
GCGGCGGCAG CGGCGGGACT GGCCGTGTCG CCGCTGGCAA AGCGCGTCGC GCCGCGCGGG
CTCGTGGATT CTGGCGCACG CCTCGGTTTA CCGACGTTGC CGGAATCGCG CGTGGTGCTG
CATTCGCGGG TGCGCGACGC ACGCTCGATC GAATCGTTGC GGCTCGTGAC GAACGGACTG
AGCGCCCAGT GA
|
|---|
| Protein sequence | MKVLDLDAVR AFVLVADLRS FTRAADALDT TQSAVSLKLK RLEAHIGKQL LERTPRVVRL
SADGEAFLDG ARNLLGAHDR ALGALSAQKR RLVLGLSEHV AGADLAALLA RVNAHDPALV
LELHMGSSVP LLQQFDERRL DAVVVRYEPD EVPRDDGQLL FTEPLSWLAR PDWQPRAGEP
LPLALLAAPC NVRSVALRTL DGAGIAWREA FIGGGVQAVG AAAAAGLAVS PLAKRVAPRG
LVDSGARLGL PTLPESRVVL HSRVRDARSI ESLRLVTNGL SAQ
|
|---|
| |