Gene Bphy_4390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_4390 
Symbol 
ID6245912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010623 
Strand
Start bp1423056 
End bp1425269 
Gene Length2214 bp 
Protein Length737 aa 
Translation table11 
GC content64% 
IMG OID642596144 
Productglycogen debranching enzyme GlgX 
Protein accessionYP_001860551 
Protein GI186473209 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases 
TIGRFAM ID[TIGR02100] glycogen debranching enzyme GlgX 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.497261 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCACG TACTTCCTGA CCGTCTGTTG CCGGGCAATC CCTACCCGCT GGGTTCGAGC 
TGGGACGGAC TGGGCGTGAA CTTCGCCGTG TTCTCGGCGA ACGCTCAACG TATCGAGCTC
TGCCTCTTCG AGCCGACAGG CAGAAAAGAA CTGAAGCGCT ATGCGCTTCC CGAATGCACC
GACGAAGTCT GGCACGGCTA CCTGCCGCAC GCACACCCCG GCACGGTCTA CGCCTTCAGG
GCGCACGGCC CGTACCAACC GCAACACGGG CATCGCTTCA ATCCGCACAA GCTGTTGCTC
GACCCGTACG CACGCAAGCT CGTCGGCCAG TTTCGATGGT CCGATGCGCT GTTCAGCTAT
CGCGTGCATT CGAACAGAAT GGATCTCTCG ATCGACCGAC GCGACTCGGC GCCCGCCATG
CCCAAATGCG TCGTCGTCGA CGAAGCGTTC GACTGGTCGC ACGACACACG CCCCAACGTG
CCGTGGAGCG AAACCGTCAT CTACGAGACC CACGTGCGCG GTGCATCGAT GTTGCGCAAG
GATCTCCGCG CGCCCGAACG CGGCACGTTC GCCGCACTCG CATCGCCGGA ATTCATCGAA
CATCTGCTGA AGCTCGGCGT CACGGCCGTC GAACTGCTGC CCGTGCACGC ATTCCTGAAC
GACCGCTTCC TCGTCGAGCG CGGGCTGCGC AACTACTGGG GCTACAACAC GGCCGCGTTC
TTTGCGCCCG AGCCGTCGTA TCTGTCGGCA CACCGGCTCG ATGAAATGCG CATCGCCGTC
CGTCAACTGC ACGCGGCGGG AATCGAGGTG ATACTCGACG TCGTCTACAA CCACACATGC
GAAGGCAATG AAATGGGCCC TACCGTGTCG TGGCGAGGAC TCGACAACGC CAGCTATTAC
CGCCTCATCC CAGGCGACGA GCGCCATCAC ATCAACGACA CGGGCTGCGG CAACACCCTC
AACCTGCCCC ATCCGCGCGT GCTGCAAATG GTGATGGACT CGCTGCGCTA CTGGTCGACG
GCTTTCAATA TCGACGGCTT CCGTTTCGAT CTCGGCGTCA CGCTCGGCCG CGAGCATTCG
GGTTTCGATC CCGGTTCGGG CTTCTTCGAC GCGCTCCGGC AAGACCCCAT CCTGTCGCAA
CGCAAGCTGA TCTCCGAACC GTGGGACATC GGGCCGGGCG GCTATCAGCT CGGCAATCAT
CCGCCCGGCG TGAGCGAATG GAACGACCGT TTCCGCGACT CCGTGCGGCG CTTCTGGCGC
GGCGACGCCG GCATGCGTCC CGATCTCGCC GCGCGCCTGA CGGGATCGGC GGATCTGTTC
AACCGGCGTT TTCGCAAGCC GACGGCGTCG ATCAACTTCG TCACGTCGCA CGACGGCTTC
ACGCTCGCCG ATCTCGTGTC GTACTCGCAC AAGCACAACG AGGCCAACAA CGAAAACAAC
AACGACGGGC ACAACGAGAA CTTCGGCTCG AACTGGGGCG TCGAAGGTCC CACCGATGAG
CCCGCCATCG CCGAAACGCG AGAGCGTGTG TCCCGTTCGC TGATCGCGAC GCTGTTCGTC
GCGCTCGGCA CGCCGATGAT GCTCGCCGGC GACGAAATGG GCCGCACGCA GCGCGGCAAC
AACAACGCGT ACTGCCAGGA TAACGAAATT TCCTGGATAG ATTGGGAACG TGCCGCCCTC
CCACACGGGC GCAAAATGAC TATGTTTTTC GCGCGCATCA TCGCGTTGCG AAAGCTGCAT
CCGCTGCTGC GCGAAAACCG CTTCCTGTTT GGCGATCGCG AAGTATTGCC CGGGCTCTAT
GACGTCGGGT GGTTCGACGA GCACGGCGAA GCGCTGACCA TCGAAGCATG GCAGGACCCG
GAAGGCCGAG CGTTCACGCT GCGGCGCGCA GGCGCGGGGC TGAACGGAGA AACGGAAGTA
TTGTTGATGA TGTTGAACGC AGCCGCGACG GCTGTGCGTT TCACGCCGCC TCCGCCGCAC
CTGGAATGGC ATGTGCTGCT GGATACGGCG GACCCCGAGG CGCCGCCCGC GCCGCTCGCC
ACGCCCGATC TGGAAGTGGC CGCGCACAGC ATGGTCGTGC TCGCTGCGCA GCCCACGGGC
GACGCGGACT GGCAGGCGAG CTGGCGCGCG GGCGCGCAGT ACGGTCCGCG TCTGTTGACG
GCGCTGCCGC CGGACCCGGG CACGTCGATG CCGGAACCGG AACAGTCCGG CTAG
 
Protein sequence
MSHVLPDRLL PGNPYPLGSS WDGLGVNFAV FSANAQRIEL CLFEPTGRKE LKRYALPECT 
DEVWHGYLPH AHPGTVYAFR AHGPYQPQHG HRFNPHKLLL DPYARKLVGQ FRWSDALFSY
RVHSNRMDLS IDRRDSAPAM PKCVVVDEAF DWSHDTRPNV PWSETVIYET HVRGASMLRK
DLRAPERGTF AALASPEFIE HLLKLGVTAV ELLPVHAFLN DRFLVERGLR NYWGYNTAAF
FAPEPSYLSA HRLDEMRIAV RQLHAAGIEV ILDVVYNHTC EGNEMGPTVS WRGLDNASYY
RLIPGDERHH INDTGCGNTL NLPHPRVLQM VMDSLRYWST AFNIDGFRFD LGVTLGREHS
GFDPGSGFFD ALRQDPILSQ RKLISEPWDI GPGGYQLGNH PPGVSEWNDR FRDSVRRFWR
GDAGMRPDLA ARLTGSADLF NRRFRKPTAS INFVTSHDGF TLADLVSYSH KHNEANNENN
NDGHNENFGS NWGVEGPTDE PAIAETRERV SRSLIATLFV ALGTPMMLAG DEMGRTQRGN
NNAYCQDNEI SWIDWERAAL PHGRKMTMFF ARIIALRKLH PLLRENRFLF GDREVLPGLY
DVGWFDEHGE ALTIEAWQDP EGRAFTLRRA GAGLNGETEV LLMMLNAAAT AVRFTPPPPH
LEWHVLLDTA DPEAPPAPLA TPDLEVAAHS MVVLAAQPTG DADWQASWRA GAQYGPRLLT
ALPPDPGTSM PEPEQSG