Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_4345 |
Symbol | |
ID | 6245867 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010623 |
Strand | + |
Start bp | 1371093 |
End bp | 1372448 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642596099 |
Product | type II and III secretion system protein |
Protein accession | YP_001860506 |
Protein GI | 186473164 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.222675 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCAG GTATCTACCC GAACGCGCTG CGATGCTTCG CAAGTGCCGC ACTCTTCATG GGCGTGCTCG CCGCCGGTGC GAGCGCTGCG GATGCGACCA GCGCGCAACG CGGCGTCGAC GCAGACGCCG CGCAAAACGC CGCCGTGCTG GATTTGTACA AGGGCGAAGT GCGCATGCTC AACGTGCCTG GCACGATCAA ACGCATCGCG ATCGGCAACG GCAAGCTCCT GACGGCGAAT GTCGTCGACG GGCGCGTGAT GCTGCTCGCC GAAAGCGCGG GCATCACGTC GCTCGTCGTG TGGAACGAGC GCGGCGTCGC GCTGCAGACG ACGGTGCGGG TCGCCAAAGG CGACGTCGGC ATGTCGGCGG CGCAGTTGCG CAGCGTGCTG GCGGCGGTGC CGGGCGTGCG CGTGCAGGAA GTGGGGCCGA ACATCGTGTT GGCGGGCAGC GTGCATCGCG AAAAGGCGGC CGCAGTGAAA GCCGCGATCG CCGATATGAC GAACGTGATC GACACCACCA CGATCGACGA AGGCGATGCG CTGAAGAAAA CCCTGCATTT CAAGGTGCAG ATCATGGAAG TGACGCGCAC CGGGCAGAAG GACATTGGCA TTGCGTGGGA CAGCCAGTTC GCGGGACCGC AGGTGTCGGG ACAAGGCTTC ATCGGCTCCG GTGCGGCAAG CGGCGCAAAC TTCTTTCTTG CAGGAATCGC ATCGACCATC ACTTCGCGCA TCAATTTCGC GATCAACAAC GGTGACGCGT TCATCCTCGC CGCGCCCGAA CTGAATACGA AGAGCGGCGG CACGGCATCG TTTCTCGCGG GCGGCGAAGT GCCGATTCCA AAGGCGGGTG CGCTCGGCAC GACCGACGTC GAATACAAGC CGTACGGCAT CCGGTTGAAC ATCAGGCCCG TCGTCGATGC GAACGACATC ATCTCGGCGA CCGTCCAGAC GGAGATCAGT CAGATCGACC CGTCGGTGTC GTATGGCGGA TTTCCAGGCT TCCTGACGCG CAGCGCCAGT TCGGACATCT CTCTGCGGGC AGGCGAAACG ATCGCAATTT CGGGCCTCGT CAGCGCGGAC GCGTTGAATG GATCGGCAGG GATGCCGTTT TTTGCGCGGC TGCCCATCAT CGGGCAACTG TTCCGCTCTG ACAGCTTCCG CGCGAAGAAC AGCGATCTCG TGATTTTCGT GACGCCGCTG ATCTCGGAGC CGTCTGGCGA ACCGAATACC GCGCTGCTGG CACGTGCGCA GGAAGGCGGG CGACGTTACG CGCAACAGTA CGGCGCGCGC AGTCCGCTCG ATGTGCCCAT TGCGCAGCCT GCGCCCTCGA ATGCAACGCA CAACCCCTCA CATTGA
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Protein sequence | MEAGIYPNAL RCFASAALFM GVLAAGASAA DATSAQRGVD ADAAQNAAVL DLYKGEVRML NVPGTIKRIA IGNGKLLTAN VVDGRVMLLA ESAGITSLVV WNERGVALQT TVRVAKGDVG MSAAQLRSVL AAVPGVRVQE VGPNIVLAGS VHREKAAAVK AAIADMTNVI DTTTIDEGDA LKKTLHFKVQ IMEVTRTGQK DIGIAWDSQF AGPQVSGQGF IGSGAASGAN FFLAGIASTI TSRINFAINN GDAFILAAPE LNTKSGGTAS FLAGGEVPIP KAGALGTTDV EYKPYGIRLN IRPVVDANDI ISATVQTEIS QIDPSVSYGG FPGFLTRSAS SDISLRAGET IAISGLVSAD ALNGSAGMPF FARLPIIGQL FRSDSFRAKN SDLVIFVTPL ISEPSGEPNT ALLARAQEGG RRYAQQYGAR SPLDVPIAQP APSNATHNPS H
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