| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4313 |
|---|
| Symbol | |
|---|
| ID | 6245836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 1324390 |
|---|
| End bp | 1325820 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642596068 |
|---|
| Product | polyhydroxyalkanoate depolymerase, intracellular |
|---|
| Protein accession | YP_001860475 |
|---|
| Protein GI | 186473133 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.77179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTGCC TCTCATCGCG CCTGGTTCTC ATCTTTAGCG CGAAAGCCAT GAATCCGCTC
GCTTATCCGG CGTACCAGGC GTTCGCCAAC CTCATGCTGC CGCTGCGTCA CGGTGCGTCG
CTGGTGCGCG GCGCGCTCGA CGCGTGGCCC GAGCATGCGG CCACACCATC TGGCCGGACG
CTGCGTGCAT CCGCCGATCT GCTGACGCTT GCGGGCCTCA CGCACACCCG TCCGCCGTTC
GGCATTGGCA GTGTCGATGT CGATGGACAG CTGGTCGACG TGTTCGAAGA CATCGTGCAG
TCGACACCCT TCTGTTCGCT GCTGCATTTC CGCAAACACG CTTCGTTCGA CGTGCCGCAG
CCGCGCGTGC TTGTGATCGC GCCGATGTCC GGCCACTTCG CGACGCTGCT GCGCGGCACG
GTCCGCACGA TGCTCAGCGA GCACGACGTG TACATCACCG ACTGGCACAA CCCGCGCGAC
GTGCCGCTTT CGGCGGGACG CTTCGGCTTC GACGAGTTCG TGCAGCACGT GATCGACTTT
ACCGACACGA TCGGCCAGGG CACGCATCTG CTCGCCGTTT GCCAGCCGAC GGTCGCCGCG
CTCGCTGCCG TCGCGCTGAT GGCCGCCGAC GATCATCCCG CGCAGCCGGC CAGCATGACC
CTGATGGCGG GGCCAATCGA TACGCGCGTG AATCCGACGC GGGTCAACGA ACTCGCGAAG
AGCAAGTCAA TTGAATGGTT CGAGCAGAAT CTGATCAGTG CCGTACCTGT CGGCTTTCGG
GGTGCGTTCC GGCGCGTCTA CCCGGGCTTC GTGCAGTTGA ACGCATTCAT GTCGATGAAT
CTCGACCGGC ATCTGGAGTC GTTCGAAGCG ATGTATCGCG AGTGTTCGAA AGGCGACCCG
GAAAAAGCCG AGGCCGTTCG AATCTTCTAT GAAGAGTACT TCGCGACGAT GGATCTGACG
GCGGACTTCT ACCTCGAAAC AGTCGACACT GTTTTCCAGC GGCATGCGCT GCCACTGCAT
GAACTGGAGG TGAAGGGACG GCGCGTCGAG CCGTCGAAGA TCACGCGCAC CGCCCTATTT
ACGGTGGAAG GAGAACGCGA CGATATTTGC GCGGTCGGGC AGACGCTTGC CGCGCAAGAT
CTGTGCGACA AGCTTCGGCC GTATCTGAAG ACACATCATG TGCAGACGGG CGTCGGGCAC
TATGGCGTGT TCAATGGACA GCGCTGGGAG CGGCAGATCT ATCCGCGTAT TCGCGCCGTC
ATTCACGACA ACGAGCCGCG TGCCGTGCCG GCGGGTGCGC GCGGCATGCA GAGTTCGCTG
ACGCTTGCGC CTGCGGCGGC ATCGAGCGCG GCCGCGCCTG CGGGCACGAC GCCCGCCGCC
GCGGAAGCCG CCGACGTCGA TCTGTCTTCC GACGAAGCCG CCACTGATTG A
|
|---|
| Protein sequence | MTCLSSRLVL IFSAKAMNPL AYPAYQAFAN LMLPLRHGAS LVRGALDAWP EHAATPSGRT
LRASADLLTL AGLTHTRPPF GIGSVDVDGQ LVDVFEDIVQ STPFCSLLHF RKHASFDVPQ
PRVLVIAPMS GHFATLLRGT VRTMLSEHDV YITDWHNPRD VPLSAGRFGF DEFVQHVIDF
TDTIGQGTHL LAVCQPTVAA LAAVALMAAD DHPAQPASMT LMAGPIDTRV NPTRVNELAK
SKSIEWFEQN LISAVPVGFR GAFRRVYPGF VQLNAFMSMN LDRHLESFEA MYRECSKGDP
EKAEAVRIFY EEYFATMDLT ADFYLETVDT VFQRHALPLH ELEVKGRRVE PSKITRTALF
TVEGERDDIC AVGQTLAAQD LCDKLRPYLK THHVQTGVGH YGVFNGQRWE RQIYPRIRAV
IHDNEPRAVP AGARGMQSSL TLAPAAASSA AAPAGTTPAA AEAADVDLSS DEAATD
|
|---|
| |