| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4287 |
|---|
| Symbol | prfC |
|---|
| ID | 6247077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | + |
|---|
| Start bp | 1287781 |
|---|
| End bp | 1289382 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642596044 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_001860451 |
|---|
| Protein GI | 186473109 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGTCT CCGAACTCAA ACGCCGCCGC ACGTTCGCGG TCATTTCCCA CCCTGACGCG
GGTAAAACCA CGCTCACCGA AAAGCTGCTG CTGTTTTCGG GCGCGATTCA GATTGCGGGC
ACCGTGAAGG GCCGCAAGAG CAACCGATAT GCGACGTCCG ACTGGATGGA AATCGAAAAG
CAGCGCGGCA TCTCCGTTGC AAGTTCGGTG ATGCAGTTCG AGTACGGCGA CTGCGTGATC
AATCTGCTCG ACACGCCGGG CCACGAGGAT TTTTCGGAAG ACACGTACCG CGTGTTGACG
GCCGTCGATG CCGCCGTGAT GGTGATCGAC GGCGCGAACG GCGTCGAAGC GCAGACGCTC
AAGCTGCTCG AAGTGTGCCG CAGTCGCAAG ACGCCGATCG TCACGTTCAT CAACAAGCTC
GACCGCGAAG TGCGCGAGCC GCTCGATCTG CTCGACGAAA TCGAGCAGCA TCTGGGCGTG
TCGGCCGTGC CGTTCACCTG GCCGATCGGC ATGGGCAAGG AATTTCAAGG CGTCTACGAC
ATCCAGAACG ACCAGGTGCG CGTGTTCCGC GCCGGTCAGG ACACGCTTGG CGGCGCGGTC
GAAACGATCC AGGCGCTCGG CGACGAAGAA GGCGAGCGGC GGTTCGGCCA CGCGTGGGTG
CGCGCGAAGG AAGAAATCGA TCTGATCACG GGCGCGACGC CCACCTTCGA TCGCGACGAA
TTCCTCGCAG GCCAGCAGTC GCCCGTGCTG TTCGGCTCGG CGATCAACAA CTTCGGCGTG
AAGGAAATTC TGGACGCGCT CGTCGACCTG GCGCCGCCGC CGTCCGCCCG CCTCACGGTG
CAGCGTCCGG TGCAGCCGGA CGAGCCGAAG TTCACGGGTG TCGTCTTCAA GGTGCAGGCG
AACATGGACC TGGCGCACCG CGACCGCGTT GCGTTCATCC GCGTCTGCTC CGGGCGCTTC
GAGCGCGGCA TGGCGCTGAA GGTTACGCGT AACAACAAGA CGTTCCGTGC GAACAACGTG
GTGACGTTCC TGTCGCAGCG TCGCGAGACC GTGAGCGAAG CGTACGCGGG CGATATCATC
GGCATCCCGA ATCACGGAAC GCTGAGTCTG GGCGACACAC TGACGGAAGG CGAACAGTTG
CAATTCGTCG GCCTGCCGTT CTTCGCGCCG GAAATCTTCC AGACGGTCGA AGTGGTCGAT
CCGATGCGCT CAAAGCAGCT CGGCGAGGCG CTGAAGCAGT TGGGCGAAGA GGGTGCAATC
CAGGTGTTCA AGCCGGTGGT CGGCGGACTG ACCATTCTCG GCGCTGTGGG TCAACTGCAG
TTCGAAGTGG TGTCGCATCG GTTGTCGACC GAGTACAAGG TCGATGTGCG GATGGCGCCT
GCGCGGTACC GGATGTCACG GTGGGTGACG TGCGACGACG CCGCTGAACT GCGGCGCTTC
TGCGATTCTT ACTCGCCGCG GATTGCTTAC GACGCGGCTG ATGCGCCAAC TTATCTTGCC
TCTCACATTT CCGAAATCGA AGTCGCGCAG AAGGCCTGGC CCAAGATCGT GTTTAACGAA
CTGCGCGAGC ATTCGGGGGC GCCGTTCAGG AAGGCCATGT AG
|
|---|
| Protein sequence | MSVSELKRRR TFAVISHPDA GKTTLTEKLL LFSGAIQIAG TVKGRKSNRY ATSDWMEIEK
QRGISVASSV MQFEYGDCVI NLLDTPGHED FSEDTYRVLT AVDAAVMVID GANGVEAQTL
KLLEVCRSRK TPIVTFINKL DREVREPLDL LDEIEQHLGV SAVPFTWPIG MGKEFQGVYD
IQNDQVRVFR AGQDTLGGAV ETIQALGDEE GERRFGHAWV RAKEEIDLIT GATPTFDRDE
FLAGQQSPVL FGSAINNFGV KEILDALVDL APPPSARLTV QRPVQPDEPK FTGVVFKVQA
NMDLAHRDRV AFIRVCSGRF ERGMALKVTR NNKTFRANNV VTFLSQRRET VSEAYAGDII
GIPNHGTLSL GDTLTEGEQL QFVGLPFFAP EIFQTVEVVD PMRSKQLGEA LKQLGEEGAI
QVFKPVVGGL TILGAVGQLQ FEVVSHRLST EYKVDVRMAP ARYRMSRWVT CDDAAELRRF
CDSYSPRIAY DAADAPTYLA SHISEIEVAQ KAWPKIVFNE LREHSGAPFR KAM
|
|---|
| |