| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4272 |
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| Symbol | |
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| ID | 6245799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 1272968 |
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| End bp | 1275406 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642596031 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001860438 |
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| Protein GI | 186473096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.564982 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACGA GCCTTTCATT GAAGTGGCGC CGCGCCTTGC GCCGGCAAGC CGCGGACCCA
TCTCAACAGG ATCAGCACTT TCTTGCGCTT TTGCTCGGCG CGTGGTCGAG CCGCCGCCCA
GTCGGTCTCA CCGGCTTCGC GATCAGCGTC GCCACGGGAA TCGGCGCGGG CACGGCGAGC
GTTGCGCTCC AAATGGCGTT GCGCGGCTCA GTGAGCGCAC CGTTCAGCAC GCAGGTCGCG
ATCGGCGCGA CGGTGGGCGC GATTGCGATG ATCGCAACAC GTCGGCGCTT CGCCGCGCAA
CAAGCGCGGC ATGCCGCAGC GATGGCGCTG GCCAGTTCGT TCCTCGACGC GAGCCGCGAT
TGCGTCAAGC TGCTCGACCT GCAAGGCCAG ATGCTTCGCA TTAACGACTA TGGCGCGACG
CTGATGGAAG CGTCGTCGCC CGTTCAGCTC GCGGGCGCGG ATTGGCTCGG TTTCTGGAAA
GGCGGCGATC GCGATGCCGC GACGACCGCG TTCAGGAACG CGCTGAACGG CACGCCCGCA
TCGTTTCGCG GCACTTGCAC GACGACGGCA GGCCAGCCGA AGTGGTGGGA TTCGCAGCTG
ATTCCCGTGA AGGATCACGG CGGCAAGGTC GTCGCCGTGG TCTGCGCATC GCTCGACATC
ACGAACCAGA CGCAACTGCT CCAGCAACTG CGCGCGAAGA GCGAGCTGAT GTCCGAGATG
GAGGCGCACG TGCAGCTCGT GTTCTTCTCG TACAGCGCGA ACTTCGAGTA TTTCCATTAC
ATCACGGCGG GTTCGTCGAA CGTGTTCGGC CTGGAACCGG AAGAGTTCAT GCGCAACCCG
AACAGCTGGC GCGAACTCGT GGTGCCGGAA GACCGCGCCG CGCTGCAGGC CGAGATGACG
CGCATCATGA CGGAATCGAC GGAAGGACGC GCGCAGTACC GTATCCGCAA GGCCGACGGT
TCTGTGCGCT GGGTGCGCAG CACGGGCTAT CCGGTGATCG GCGACAACGG TGACGTGCTG
CGGATCGTCG GCATCACCGA GGACGTGACG GCGGAACAGG AACGCATCGC GGAACTCGAC
CGGCTCGCGT ACACCGATTC GCTCACGGGT CTCGCGAATC GCGCCGCGCT GCTGCGCGAA
ATCGAAAGCC GCTGCGCGGC GAGCAAGCCG TTCGGCCTGA TGTTCGTCGA TCTCGACCGT
TTCAAGGTGC TCAACGACAC GCTCGGCCAC CTCGCCGCCG ATCATCTGTT GCGTCACGTC
GGCGGCATCA TTCGCCGTTC ACTGCCCGAC GACGCGTATA TCGCGCGGCT GGGCGGCGAC
GAATTCGCGG TGCTGATCGG CAGCGTCGTC GACCAGCCGG GGCTCGAAGC GCAGGCGAAG
GCACTGCTCG GCGGGCTGTC GGAGAATCGC CTCGAAGGCC TCGCGGGTGC GTTCATCACG
GCGTCGATCG GCATCTCGAT CTATCCGGAG CACGGCAGCG GCCACGACGC GCTGCTGTCT
AGCGCCGACG TCGCGATGTA TGCGGCAAAG AAGACGGGCC GCAACGGCTA CCAGTTCGCC
GGCAAGGAAG CGGCGCGGAC CATCGGCGAT TTCGAACTCG AGCGCGACGT ACCCGAGGCG
CTCGCGACGA ACCAGTTCTT CTTGCACTTC CAGACCATTC ACGAGCCGCA TTCGCTCGCG
GTGCACGGCG CCGAAGCGTT GATCCGCTGG CAGCATCCGA GGCGCGGGCG GATATCACCG
GGCGATTTCA TTCCGCTGCT GGAGGAAACC GGCTTTGTCG AAGACGTCGG CGTGTGGGTG
CTCGACAACG CGCTGCGCCA GCTCGCTGCA TGGCGGCAGG CGGGCGCGAT GAATCTGGGC
GTGTCGGTAA ACGTGTCGGC GCGGCAACTC GGCAGCGAGC AGATCGTGCA ACAGGTGGAC
CGCGCGCTCA AGCGACACGG TATTCCGCCC GGCAAGCTCG AAATCGAGCT GACGGAAACC
GCGCTGATGA AGAATCCGAA GCAGGCGCGG ACGTCGATCG TCGAGCTGAA GCGGCTCGGC
GCGCGCATCG CGATCGACGA TTTCGGCACG GGCTACTCGA GCCTGATGTA TCTCGCCGAT
TTCGAGCCGC ACACGCTAAA GATCGACCGG CACTTCACAT CGAAGATCGA ACACGATCCA
ACGACGCAAA CCATCGTGGA AGGCATCATC GATCTGGCGC ACAAGCTGGG CATCCAGGTG
ATCGCGGAGG GTGTCGAGCA GACTGCGCAA CTGGACATCC TGCGCCGGGT GAATTGCGAT
TACGTGCAGG GTTACCTGCT CAGTCGGCCG CAGGCGCCCG AAGGACTGAT GACGCGCGCG
CAGCCTGGCG CGCGCATCGG CCCGCGCGTC AGAACCGGTG CCGCAAGCCC GCGCCGATCA
GCACCTGATT GTGGCCCGAC GACGGATCGG CCGAATTGA
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| Protein sequence | MPTSLSLKWR RALRRQAADP SQQDQHFLAL LLGAWSSRRP VGLTGFAISV ATGIGAGTAS
VALQMALRGS VSAPFSTQVA IGATVGAIAM IATRRRFAAQ QARHAAAMAL ASSFLDASRD
CVKLLDLQGQ MLRINDYGAT LMEASSPVQL AGADWLGFWK GGDRDAATTA FRNALNGTPA
SFRGTCTTTA GQPKWWDSQL IPVKDHGGKV VAVVCASLDI TNQTQLLQQL RAKSELMSEM
EAHVQLVFFS YSANFEYFHY ITAGSSNVFG LEPEEFMRNP NSWRELVVPE DRAALQAEMT
RIMTESTEGR AQYRIRKADG SVRWVRSTGY PVIGDNGDVL RIVGITEDVT AEQERIAELD
RLAYTDSLTG LANRAALLRE IESRCAASKP FGLMFVDLDR FKVLNDTLGH LAADHLLRHV
GGIIRRSLPD DAYIARLGGD EFAVLIGSVV DQPGLEAQAK ALLGGLSENR LEGLAGAFIT
ASIGISIYPE HGSGHDALLS SADVAMYAAK KTGRNGYQFA GKEAARTIGD FELERDVPEA
LATNQFFLHF QTIHEPHSLA VHGAEALIRW QHPRRGRISP GDFIPLLEET GFVEDVGVWV
LDNALRQLAA WRQAGAMNLG VSVNVSARQL GSEQIVQQVD RALKRHGIPP GKLEIELTET
ALMKNPKQAR TSIVELKRLG ARIAIDDFGT GYSSLMYLAD FEPHTLKIDR HFTSKIEHDP
TTQTIVEGII DLAHKLGIQV IAEGVEQTAQ LDILRRVNCD YVQGYLLSRP QAPEGLMTRA
QPGARIGPRV RTGAASPRRS APDCGPTTDR PN
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