| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4139 |
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| Symbol | |
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| ID | 6245667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 1129389 |
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| End bp | 1130261 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642595899 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001860306 |
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| Protein GI | 186472964 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGTCT CAGCGGAGAT CGTCTTGGCC GTTTCCAATC TCGTCGTGGA CGACACACAA
ACTGACGCAG CCGCCGCAAG TTCGGGCAGC TCGTTTTATC TCGCGATGCG CATCTTGCCG
CCTGCGCAGC GCGACGCGAT GTATCAGGTC TACGCGTTCT GCCGCGCTGT CGACGATATC
GCCGACAGCG ACCTGCCGCG CGCCGAGCGC GCCGCGGGTC TCGAACGCTG GCGCGCCGAT
ATCGACGCTT GCTACGCCGG CTCGCCGCGG GCATCCCTGC TCGAGCTGAC CCGGCACATC
CACACATTTC ATCTGCAGCG CGAAGATTTC CACGCGATGA TCGACGGCAT GGCGATGGAC
GCCGCCACCG ACATCTGCGC GCCCGACGAG GCGACGCTCG ACCTGTATTG CGATCGCGTC
GCGAGCGCGG CCGGCCGGCT ATCGGTGAGA ATTTTCGGGA TGCAGGAACA GCCCGGCATC
GAGCTGTCGC ACCATCTGGG CCGCGCGCTG CAACTGACTA ATATTCTGCG TGACATCGAC
GAAGACGCGC AGATCAACCG CTGCTATCTG CCGTACGAGT TGCTCGCTCG CGAAGGCATC
GCGACATCGA GTCCGCTGAC GATCGCCGAC GATCCGTCGC TGCCGCGCGT CTGCGCGACG
CTCGCGGAGC GCGCCAAGCA GCATTTCGCC GCCGCCGACG CGATCATGGA TGCGCAACCG
CGTGCGCAGG TGAAAGCGCC GCGCATCATG TCGGGCGTGT ATCGCGTGCT GCTCGAGCGC
ACGCTGGAGC GCGGCTTTGA CATTCCGCGC ACGAAAGTCA GCAAGCCGAA GCTGCGGATG
CTGGCCATCG TTGCGCGGTA CGCTCTCTTT TGA
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| Protein sequence | MGVSAEIVLA VSNLVVDDTQ TDAAAASSGS SFYLAMRILP PAQRDAMYQV YAFCRAVDDI
ADSDLPRAER AAGLERWRAD IDACYAGSPR ASLLELTRHI HTFHLQREDF HAMIDGMAMD
AATDICAPDE ATLDLYCDRV ASAAGRLSVR IFGMQEQPGI ELSHHLGRAL QLTNILRDID
EDAQINRCYL PYELLAREGI ATSSPLTIAD DPSLPRVCAT LAERAKQHFA AADAIMDAQP
RAQVKAPRIM SGVYRVLLER TLERGFDIPR TKVSKPKLRM LAIVARYALF
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