| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4101 |
|---|
| Symbol | |
|---|
| ID | 6245631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | + |
|---|
| Start bp | 1094056 |
|---|
| End bp | 1095174 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642595863 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001860270 |
|---|
| Protein GI | 186472928 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA TTCTGATCGC GACGGCAGTG GCTGCCTCGT TCGCCTCGGT CGCCCACGCA
CAAAGCAGCG TCACGCTGTA CGGTACGCTG GACGCAGGCA TCACGTACAC CAGCAACGTC
GGCGGCAACG CACAATGGGC GCTCGGCAGC GGCACCATCG ACGAAAACCG CTTTGGCCTG
CGCGGCGTCG AAGACCTCGG CGGCGGTCTG AAGACGATCT TCACGTTGGA GCAAGGCTTC
GACTTGAACA ACGGCTCGCA AGCAAGCGCG GGCAAGATGT TCTCGCGCCA GGCATTCGTC
GGTCTGTCGA GCGACGCCGG CACGGTCACG CTGGGCCGTC AGTACGACGC AGTGCATGAC
TTCCTCGCGC CCGTGACGGC GGTTGGCAGC TGGGGCGGCA GCAACTTCGC GCACCTGGGC
AATCTGGACA TGCTGGACGA CAACAGCGCC ATCCCGACCA ATAACGCGAT CAAGTTCACG
AGCGCGAACT ACGCCGGCTT CTCGTTCGGC GGCACGTATG GCTTCTCGAA CAGCTCGAGC
TTCGCCGCCA ATCGCGAATA CAGCTTCGGG GCGGGCTATC AGAACGCTGG TCTGCGCGTC
GGTGCCGGCT ATCAGCAGCG CAACAGCCCG AACGTGAACA GCAAGGGCGC TTCGGATCTG
GTCGACCTGT CCGGCCTCGT CGATGTGCCG TCGGACGTGT CGTTCCGCCA GCGTTCGTTC
GGTGCCGGTG CAAGCTACGC ATTCGGTCCG GCCGTCATGG GCCTTGCATG GACGCAAGCG
CGCTTCGACA ACTTCACGGG TTCGACGGCA TCGCTGCATA CGAACAACTA CGAGGTGAAC
GCCAAGTACA ACCTGACACC GGCTCTCGGC CTGGGCATCG CGTACACGTA CACGAACGGC
GCTGCGGGCG ACTTCCACTT CCACGCTAAC CAGGTTGGTC TGCAAGGCGA CTACGCGCTG
TCGAAGCGCA CGGACATCTA CGCACAAGGC GCGTACATGC TGACCAGCTC GCCGCATGGC
GACCTGATCC CGGCCGTCAT CGACAACGGC AGCGCCACGG GCGTGTCGTC GTCGCGCCGT
CAGACGGTGG CATCGGTCGG TCTGCGTCAC CGCTTCTAA
|
|---|
| Protein sequence | MKKILIATAV AASFASVAHA QSSVTLYGTL DAGITYTSNV GGNAQWALGS GTIDENRFGL
RGVEDLGGGL KTIFTLEQGF DLNNGSQASA GKMFSRQAFV GLSSDAGTVT LGRQYDAVHD
FLAPVTAVGS WGGSNFAHLG NLDMLDDNSA IPTNNAIKFT SANYAGFSFG GTYGFSNSSS
FAANREYSFG AGYQNAGLRV GAGYQQRNSP NVNSKGASDL VDLSGLVDVP SDVSFRQRSF
GAGASYAFGP AVMGLAWTQA RFDNFTGSTA SLHTNNYEVN AKYNLTPALG LGIAYTYTNG
AAGDFHFHAN QVGLQGDYAL SKRTDIYAQG AYMLTSSPHG DLIPAVIDNG SATGVSSSRR
QTVASVGLRH RF
|
|---|
| |