| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_4090 |
|---|
| Symbol | |
|---|
| ID | 6245620 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 1085784 |
|---|
| End bp | 1086398 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642595852 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001860259 |
|---|
| Protein GI | 186472917 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.210089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGA TGGGCGCCAT GTCCGCGACG CACGCGGAGC CGCGCGCATT GAGCGAGCGC
GATCCGGACG CGGAGCTGCT TGCGGGGGTC GGCAGGCAGG AGCCGGCCGC CGTACGCACG
CTTGTCGCGC GCAAGTTGCC GGGCCTGCTG GCGCTCGCCA CGCGGATGCT GGGAGACCGT
ATGGAAGCGG AAGACGTCGC ACAGGAAGCG TTCATGCGCA TCTGGAAACA GGCGCCGCGC
TGGCGCGAAG GCGAGGCGCG TTTCGACACG TGGCTGCATC GCGTGGCGTT GAATCTTTGC
TATGACCGCT TGCGCGCGCA TCGCGAAGAG CCCGCCGATG AACTGCCCGA CACCGACGAT
CCCGCCGCTG CACCCGACAT GCAGCTAGAA GCGCAGTCGC GCGACGCGCG TGTGCGGGAC
GCGCTTGCCG CGCTGCCCGC GCGCCAGCGC GAGGCGCTCG TGCTGAGCTA CTACCAGGAA
CTGTCGAACA TCGAGGCGGC CGCGCTGATG GGCATTACCG TCGAAGCGCT CGAAAGTCTG
CTGGCGCGGG CGCGGCGCAG TCTGCGCGCG CAGCTGGCGG GCGACGGTCC TGCCGGGACG
AGGACAAGGC GATGA
|
|---|
| Protein sequence | MGAMGAMSAT HAEPRALSER DPDAELLAGV GRQEPAAVRT LVARKLPGLL ALATRMLGDR
MEAEDVAQEA FMRIWKQAPR WREGEARFDT WLHRVALNLC YDRLRAHREE PADELPDTDD
PAAAPDMQLE AQSRDARVRD ALAALPARQR EALVLSYYQE LSNIEAAALM GITVEALESL
LARARRSLRA QLAGDGPAGT RTRR
|
|---|
| |