Gene Bphy_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_3980 
Symbol 
ID6245510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010623 
Strand
Start bp956822 
End bp958651 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content66% 
IMG OID642595742 
Productallophanate hydrolase 
Protein accessionYP_001860149 
Protein GI186472807 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 
TIGRFAM ID[TIGR02713] allophanate hydrolase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.143923 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTCAT TCGATCTGCG TCTGCCCGCT GTGCGGGCCG CGTATCGCGA AGGCCGCACC 
ACGCCGCGCG CACTGCTCTC CGCATTGCGC GAGCGCGCCG CGGCATTGAA CCCGGACTTC
CATCTCTTCA TCCATCTGTT GAGCGACGCC GAAATCGAGC CTTATCTCGC CGCGCTGGAT
GAACGCGACA TCGATTCGCT GCCGCTCTAT GGCGTGCCGT TCGCACTGAA GGACAACATC
GATCTCGCCG GCATTCCGAC CACCGCCGCC TGCCCCGCGT TCGCGTACAC ACCGGACCAA
TCGGCGACGC TCGTCGCGCA ATTGATCGCA CTCGGTGCGG TGCCCATCGG CAAGACGAAT
CTCGATCAGT TCGCCACCGG CCTCAACGGC ACGCGTTCGC CGTATGGCAA GTGCCGCAAC
AGCGTGCATG CCGGCTATCC GTCGGGCGGA TCGAGCGCGG GGTCGTCGCT GGCCGTGGCG
CTGGGTGTCG CAAGCTTCGC GCTCGGCACG GATACGGCCG GCTCGGGCCG CGTGCCCGCC
GCACTGAACA ACCTCGTCGG TACGAAGGGT ACGAAGGGCT TGCTGTCGAC GGCGGGCGTC
GTGCCCGCGT GCCGCACGCT CGACTGCGTA ACCTACTTCA CGGCAACCGC GAGCGAGGCG
AGTGAACTGC TTGCGCTCAC CGCCCGTCAC GATCCCGCCG ATGCGTATAG CCGCGCAAAT
CCGCAATGGA ATGATGCGTC GGCATTCGGC GCCATCAAGG GCTTTCGCTT TGGCGTGCCC
GCGCAACTCG AATTTGCCGG CTGCGACGAA AGCCCCGCGC TGTTCGCGCA GGCACGCGCG
GCGCTCGAAA CAATCGGCGG CGAGGCCGTC GAAATCGACT TCGCGCCGTT TCTCGAAGCG
GCGCGTCTGC TTTATGAAGG ACCGTGGGTC GCCGAGCGCT ACAGCGTGGC GGGCGCGTTG
ATGGAATCGC AACCCGATGC GGTGTTGCCC GTGATTCGCG ACGTGCTCGC GAAAGCACCG
GGCGCAACGG CCGTCGATGC GTTTCGCGCG CAATACCGGC TACAGGCGTT GAAGCAGTAT
TGCGACGCCG TGCTTGCGCA ACTCGATTGC GTGTTGACGC CTTCCATTCC GCGTGCGGTC
ACGCTGGCGG AACTCGAGCG CGATCCTGTC GGTGCGAACT CGTTGCTCGG GCATTACACG
AACTTCATGA ACCTGCTCGA CTACACGGCT GTCGCGACGC CCGCGGGTTT CATGCGTAAC
GGCCTGCCGT GGGGCGTGAC ACTGTTCGGC CGTGCGTTCA CCGATCAATA TCTGTTGAGC
GTCGCCGATG CGCTGCATCG CGAGCTCGCC GTGCCGCTGA TCGGCGGCGC GCAACAGCGC
AGCGATGTAC CCGCGCGTGC TGCGCGTCAC GACAGGATGA AGCTGGTCGT GTGCGGTGCG
CATCTCGAAG GGCTCGCGCT GAACGGGCAG TTGCGCTCGC GTGGCGCGCG GCTCGTCGAA
GCGACGGCCA GCGCACCATG CTATCGGCTG TATGCGCTCT CGGGTGGCAT CATGCAGCGT
CCGGGCATGA TCCGCGACAC GGCCAACGGT GCGGCAATTG CCGTCGAAGT ATGGGAATTG
CCGAGCAGCG AAGCCGGCTC GTTCCTCGCT GGCATCCCCG CGCCGCTCGC CCTCGGCAAG
GTGGAACTTG CGGACGGCCG TTGGGAGACC GGCTTCGTGT GTGAAGCGCA TGGAGTCGAA
GGGGCCGTCG ACATCACGTC GTACGGGGGC TGGCGCGCGT GGCTGCAACG CGACGCATCT
CCGCAAACCG CCAAGCCTGC CGTCGCGTAA
 
Protein sequence
MDSFDLRLPA VRAAYREGRT TPRALLSALR ERAAALNPDF HLFIHLLSDA EIEPYLAALD 
ERDIDSLPLY GVPFALKDNI DLAGIPTTAA CPAFAYTPDQ SATLVAQLIA LGAVPIGKTN
LDQFATGLNG TRSPYGKCRN SVHAGYPSGG SSAGSSLAVA LGVASFALGT DTAGSGRVPA
ALNNLVGTKG TKGLLSTAGV VPACRTLDCV TYFTATASEA SELLALTARH DPADAYSRAN
PQWNDASAFG AIKGFRFGVP AQLEFAGCDE SPALFAQARA ALETIGGEAV EIDFAPFLEA
ARLLYEGPWV AERYSVAGAL MESQPDAVLP VIRDVLAKAP GATAVDAFRA QYRLQALKQY
CDAVLAQLDC VLTPSIPRAV TLAELERDPV GANSLLGHYT NFMNLLDYTA VATPAGFMRN
GLPWGVTLFG RAFTDQYLLS VADALHRELA VPLIGGAQQR SDVPARAARH DRMKLVVCGA
HLEGLALNGQ LRSRGARLVE ATASAPCYRL YALSGGIMQR PGMIRDTANG AAIAVEVWEL
PSSEAGSFLA GIPAPLALGK VELADGRWET GFVCEAHGVE GAVDITSYGG WRAWLQRDAS
PQTAKPAVA