| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3941 |
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| Symbol | |
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| ID | 6247072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 911227 |
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| End bp | 913284 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642595703 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001860110 |
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| Protein GI | 186472768 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAACT CCATGACGAA AAAGCTGAAC GAAGTATCCG TCGATGACGA CGCATCCCAG
AGCGAAGAAA CTGCAGCGAC CCCCGCTCCG GGCAAAGGCG AGAAGGCCAA GGCACGCGAC
CGCCGCGCTA AAGAAAAGGC GCTGCTGAAG GACGCGTTCG CGTCTTCGCA GCCTGGCACC
GTCGAGGAGC TTGAAGAGCG CCGCTCGAAG CTGCGGGCGC TGATCAAGCT CGGCAAGGAG
CGCGGCTTCC TGACCTACGG CGAGATCAAC GACCACCTCC CGGACAACTT CACGGAAACC
GAGGCGATCG AAGGGATCAT CAGCACGTTC AACGACATGG GTGTTGCCGT CTACGAGCAG
GCGCCCGATG CCGAAACGCT GCTGTTGAAC GACAACGCGC CGAACGCCTC GTCGGACGAC
GAAGTGGAAG AGGAAGCCGA AGTCGCGCTG TCCACTGTCG ATTCCGAATT TGGTCGCACG
ACCGACCCGG TGCGTATGTA CATGCGCGAA ATGGGCACGG TCGAACTGCT CACGCGTGAA
GGCGAAATCG AAATCGCGAA GCGTATCGAA GACGGGCTGA AGCACATGGT GATGGCCATC
TCCGCGTGCC CGACGACGAT CGCCGACATC CTCGCGATGG CGGAGCGCGT TGCGAACGAA
GAGATTCGCA TCGACGAACT CGTCGACGGC CTGATCGACG TGAACGCAGA AGATACCGAT
GGCTTCTCCG AACAGGAAGC CGAAGCGATC GAAAGCGAAG ACGAAGAAGA GGAAGAGGCT
GACGAGGAAG AAGAGGAAGA CGACGACGGC GCCGCGCAAG CGACGGCCAA CGCCGCTCAG
CTCGAAGAAC TCAAACGCCT GTCGCTCGAA AAATTCGCGC TGATCAGCGA ATGGTTCGAC
AAGATGCGCC GCGCGTTCGA AAAGGAAGGC TACAAGTCGA AGTCCTACCT GAAGGCGCAG
GAAACCATCC AGGAAGAGTT GATGATGATC CGCTTCACCG CGCGTACGGT GGAGCGTCTG
TGCGACACGC TGCGCGCGCA GGTGGACGAA GTGCGTCAGG TCGAGCGTCA GATCCTGCAT
ACGGTCGTCG ACAAGTGCGG CATGCCGCGT GCCGAGTTCA TCGCGCGTTT TCCGGGTAAC
GAGACGGACC TCGAGTGGGC CGACAAGATC GTCAGCGAGA ACCATGCGTA CAGCGCGATC
CTGTCGCGTA ACGTGCCCGC CATCCGCGAA CAGCAGCAGC GTCTGCTGGA TTTGCAAGCG
CGCGTCGTGC TGCCGCTGAA GGATCTGAAG GAAACCAACC GTCAGATGGC GGCGGGCGAA
CTGAAAGCGC GTCAGGCTAA GCGCGAAATG ACGGAGGCGA ACCTGCGTCT CGTGATCTCG
ATCGCGAAGA AGTACACGAA CCGTGGCCTG CAGTTCCTCG ATCTGATTCA GGAAGGCAAC
ATCGGCCTGA TGAAGGCCGT GGACAAGTTC GAATATCGCC GTGGCTACAA GTTCTCGACG
TACGCGACGT GGTGGATCCG CCAGGCCATC ACGCGCTCGA TCGCCGATCA GGCGCGCACC
ATTCGCATCC CGGTTCACAT GATCGAAACG ATCAACAAAA TGAACCGCAT CTCGCGTCAG
ATTCTGCAGG AAACCGGCCT GGAGCCGGAT CCGGCAACGC TGGCCGAGAA GATGGAAATG
CCGGAAGACA AGATCCGCAA GATCATGAAG ATCGCAAAGG AGCCGATTTC GATGGAAACG
CCCATCGGTG ACGACGACGA TTCGCATCTC GGCGACTTCA TCGAGGACAC GAATACGGTC
GCGCCGTCGG ACGCCGCGCT GCATGCGAGC ATGCGCGATG TCGTGAAGGA CGTGCTCGAT
TCGCTGACGC CACGCGAAGC GAAGGTGCTG CGCATGCGTT TTGGTATCGA AATGAGCACG
GATCACACGC TGGAAGAAGT CGGCAAGCAG TTCGACGTGA CGCGTGAGCG TATCCGTCAG
ATCGAGGCGA AGGCGCTGCG CAAGCTGCGT CACCCGAGCC GTTCGGACAA GCTGAAGTCG
TTCCTCGAAG GGAACTAG
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| Protein sequence | MANSMTKKLN EVSVDDDASQ SEETAATPAP GKGEKAKARD RRAKEKALLK DAFASSQPGT
VEELEERRSK LRALIKLGKE RGFLTYGEIN DHLPDNFTET EAIEGIISTF NDMGVAVYEQ
APDAETLLLN DNAPNASSDD EVEEEAEVAL STVDSEFGRT TDPVRMYMRE MGTVELLTRE
GEIEIAKRIE DGLKHMVMAI SACPTTIADI LAMAERVANE EIRIDELVDG LIDVNAEDTD
GFSEQEAEAI ESEDEEEEEA DEEEEEDDDG AAQATANAAQ LEELKRLSLE KFALISEWFD
KMRRAFEKEG YKSKSYLKAQ ETIQEELMMI RFTARTVERL CDTLRAQVDE VRQVERQILH
TVVDKCGMPR AEFIARFPGN ETDLEWADKI VSENHAYSAI LSRNVPAIRE QQQRLLDLQA
RVVLPLKDLK ETNRQMAAGE LKARQAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN
IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ
ILQETGLEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDTNTV
APSDAALHAS MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ
IEAKALRKLR HPSRSDKLKS FLEGN
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