Gene Bphy_3825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_3825 
Symbol 
ID6245363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010623 
Strand
Start bp792469 
End bp794148 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content67% 
IMG OID642595595 
ProductTPR repeat-containing protein 
Protein accessionYP_001860002 
Protein GI186472660 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGACG CGGTGCCGCG TGTACGTGCC GATTCGATGC GCCGATCAAC TCCTTATTTC 
TCCGCCATGC TGCCTACTTT CGATCCGTTT CTCGCCTTCC TTCGCTATGC GGCCGCTGCG
CAGTCGGGCG GCGATGCGCG AGCGCGTGCG CTGTGGCTCG AGGCCGCGTC CTGCCTCCAC
GCGACGGATA ACGCGTCGAT CGACGGGCTG ATGCTCGACC TGCTCGAACA GCAGCAGTTC
GAGCAGGCGG TGTCGCTGGT CGAGGCCGTC GCGCAACTCG AACCGCACAG CGCAGCCGCA
AACATGCGTC TCGGCTACGC GATGCAGATG GCCAGCCGCG ATCGCGATGC GCTCGCGCCG
TATCGTCGTG CGCTCGCGAT CGACCCTGCG TTTCCGCAAT TGCGCAAAAA CCTCGCGATC
GCGCTGAACC GCACGGGCGC CGATCCCGTG CAAGAGCGGG AGATGCTCGA AGCGGCCGTC
GCAGCGGCCC CGTCCGACCT CGCGCTGTGG CTCAACCTGA TGCCTGCGCG GCGCGCCTGC
TTCGATCTCG AAGGATCGCT GGCGGCGGCG GAGCGTGCTG TCGAGCTCGA TCCGCAGAGC
GCGATCGCGC ATGGCAATCT CGCGCAGGCG CTGAAGGAGT CGCAGCGCTG GGACGACGCG
CTGGATCACG CGAACAAGGC CTGTGCGCTC GCTCCCGGCA ATCCGTCGCT GCGCACGGCG
CTCGGCGTGC TGCATCTGCT GCGCGGAGAA TACGCGCAAG GCTGGCCTGC GCACGAAGCG
CGCTGGAGCG ACCCGGCGAG CATGCTGACG GAAGGCCGTC CGCTGTTCGG CAGGCCGCAA
TGGCGCGGCG AATCGCTCAA GGGCAAGACT TTGCTCGTGT GGGGCGAGCA GGGCATGGGC
GACGTGCTGC AGTTTTGCCG CTTCATTCCG CTTCTGGCGC AGCGCGTGCA TCGCGAGGGC
GGGCGGATCG TCTGGAATTC GTTTGCGCAT ATGGGCGCGC TGCTGCCGCG CAGTTTCGCG
GAACACATCG ATGCGTACTC CGTCACGCGC GACCTCGAAT CGTTGCCGAT GTTCGATTTC
GAATTGCCGC TCGTGAGCGC GCCGCTGATG CTCGATACGC GCGTCGAATC GATCCCGCGA
GACGTGCCGT ATCTGCGCGC GGACGCGGAC GCTCGCGCGG CATGGCGCAC GCGTCTCGCC
GATGAAAAGC GTCTAAAGGT CGGGCTCGCG TGGACGGGCA GCGTGAATCA CGGACGCAAC
CGCTTTCGCC GCGTCGGCCT GGAGCGTTAC GCGCGGGCGT TTCGCGATCT CGACGGCGTC
GCGTTCTATT CGCTGCAGCC CGGCGCAACG GCCGATGTCG ACGCGGCCCG CGCAGCCGGT
CTGCCCATCG CCGACTTCAC GCATGAATGG CGCAGCTTCG ACGATACGGC CGCGTTCGTC
AGCGAACTGG ATCTGGTGAT CAGCGTGTGC ACGTCGGCGG CGCACCTCGC GGGCGCGCTC
GGGCAGCGTA CGTGGGTGGT GCTCGACGTG AATCCGTACT GGACCTGGAT GACGGACAGG
CGCGACAGCC CGTGGTATCC GACGGCCACG CTATACCGGC AGCGGCAATT CGGAGCGTGG
CAACCGGTGA TGGCCGAAGT CGCACGCGAC CTGCGCGCGC TGGCTGCAAG CGGCGTCTGA
 
Protein sequence
MADAVPRVRA DSMRRSTPYF SAMLPTFDPF LAFLRYAAAA QSGGDARARA LWLEAASCLH 
ATDNASIDGL MLDLLEQQQF EQAVSLVEAV AQLEPHSAAA NMRLGYAMQM ASRDRDALAP
YRRALAIDPA FPQLRKNLAI ALNRTGADPV QEREMLEAAV AAAPSDLALW LNLMPARRAC
FDLEGSLAAA ERAVELDPQS AIAHGNLAQA LKESQRWDDA LDHANKACAL APGNPSLRTA
LGVLHLLRGE YAQGWPAHEA RWSDPASMLT EGRPLFGRPQ WRGESLKGKT LLVWGEQGMG
DVLQFCRFIP LLAQRVHREG GRIVWNSFAH MGALLPRSFA EHIDAYSVTR DLESLPMFDF
ELPLVSAPLM LDTRVESIPR DVPYLRADAD ARAAWRTRLA DEKRLKVGLA WTGSVNHGRN
RFRRVGLERY ARAFRDLDGV AFYSLQPGAT ADVDAARAAG LPIADFTHEW RSFDDTAAFV
SELDLVISVC TSAAHLAGAL GQRTWVVLDV NPYWTWMTDR RDSPWYPTAT LYRQRQFGAW
QPVMAEVARD LRALAASGV