| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3821 |
|---|
| Symbol | |
|---|
| ID | 6245359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 784879 |
|---|
| End bp | 786063 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642595591 |
|---|
| Product | phosphonopyruvate decarboxylase |
|---|
| Protein accession | YP_001859998 |
|---|
| Protein GI | 186472656 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
|---|
| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.416111 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGG CAGCACAGTT CGTCGAGGCG GCGCGCGAGC GCGGCTTCGA CTGGTATGCG
GGCGTGCCGT GCTCGTATCT GACGCCGTTC ATCAACTACG TGCTGCAGGA TCCGAAGCTG
CATTACGTGT CGGCGGCGAA CGAAGGCGAT GCCGTCGCGC TCATCGCGGG CGTGACGCTC
GGCGCGCAGA ACGGCCGCCG CGGCGTGACG ATGATGCAGA ACTCGGGCCT CGGCAACGCA
GTGAGCCCGC TTACGTCGCT CACATGGACG TTCCAGCTGC CGCAGCTCCT GATCGTCACG
TGGCGCGGCC AGCCAGGCGT CGCGGACGAG CCGCAGCATC AGCTGATGGG CCCCATCACG
CCGGCCATGC TCGACACGAT GGAGATTCCG TGGGAGACCT TCCCGACGGA ACCCGACGCA
ATTGGCCCCG CGCTCGACCG CGCAATCGCG CATATGGATG CGACGGGCCG CCCATACGCG
CTCGTGATGC AGAAGGGCAG CGTCGCGCCC CACGAACTCA AGGACGCGGG CCGCTCTGCG
AAGCGCGAAG CATGCATGGC ACGCGATGTC TCGCGAGCAA AGACACCCGA CGCCTTGCCG
ACCCGCAACG AAGCGCTGCA ACGCGTGATT GCGCACACGC CGTTGCATTC GACCGTGGTG
CTGGCGTCGA CGGGATTTTG CGGACGCGAG CTCTATGCAA TCGACGATCG CCCGAACCAG
CTTTACATGG TCGGCTCGAT GGGCTGTCTG ACGCCGTTCG CGCTGGGCCT TGCGCTCACG
CGTCCGGATC TGCACGTGGT CGCGCTCGAC GGCGACGGAG CCGCGCTGAT GCGCATGGGC
GTGTTCGCGA CACTCGGCGC GTACGGTCCT TCGAATCTCA CGCACATTTT GCTCGACAAC
GGCGCGCACG ATTCGACGGG CGGGCAGTCG ACGGTATCGC CGCAGGTGTC GTTCGCGGGT
GTCGCGGCGG CGTGCGGCTA TGCGTCGGCG GTCGAAGGCG ACGACGTGAG CCTGATCGAC
GAACTGTTCG CGTCGCCGCT GCTCGACGGC CCGCGCTTCG TGCGCGTTGC GATTCGCCGC
GGCACGCCGG ATGGCTTGCC GCGCCCGACC ATTACGCCGC CGGATGTGAA GACGCGCCTG
ATGCGCCACA TCGCCATGGG CGGCCCGAAC CAAGGAGCAC GCTGA
|
|---|
| Protein sequence | MIEAAQFVEA ARERGFDWYA GVPCSYLTPF INYVLQDPKL HYVSAANEGD AVALIAGVTL
GAQNGRRGVT MMQNSGLGNA VSPLTSLTWT FQLPQLLIVT WRGQPGVADE PQHQLMGPIT
PAMLDTMEIP WETFPTEPDA IGPALDRAIA HMDATGRPYA LVMQKGSVAP HELKDAGRSA
KREACMARDV SRAKTPDALP TRNEALQRVI AHTPLHSTVV LASTGFCGRE LYAIDDRPNQ
LYMVGSMGCL TPFALGLALT RPDLHVVALD GDGAALMRMG VFATLGAYGP SNLTHILLDN
GAHDSTGGQS TVSPQVSFAG VAAACGYASA VEGDDVSLID ELFASPLLDG PRFVRVAIRR
GTPDGLPRPT ITPPDVKTRL MRHIAMGGPN QGAR
|
|---|
| |