| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3794 |
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| Symbol | |
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| ID | 6245332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 756290 |
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| End bp | 759037 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642595564 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_001859971 |
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| Protein GI | 186472629 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGCG CGCGCCTCGT CCTGCTACCG CTGGTGATTC TGCTGACCGG GTTGACGATC
ACCTGGTCAG TGTGGGATCA CGAGCGTCAG GCCGTGCGGC GCGAACTGCT CTCCGAATTC
AATTTCGCAC TGGGCGATGC CGTTAGCCGC GTCGAACAGC GGATGGCGAC CTATGAGCAG
ATGCTGCGCG GCGTGCAGGG CATGTTCGCC GCTCGCGGCT CGCTCGATCT CGACGCGTTT
CATGGCTACA TCGGCGCCGT CAATGCCGAC TCGAGCGTCG CGGGCATGCA GGCGCTCGGT
GTCGTGCAAT GGGTGAGCGC GCAACGGCAC GACGCGCATC TGGCCGAGAT GAACCGCCGC
ATCGGCAGGC GCTATGCGAT CAGGCCGCCC GGCGTACGCG ACGGCTACGC GCCCGTGGTC
GCGCGCGAGC CGGTGTACGC CGATCCCAAT GCCGTGCTCG GCTACGACAC ATGGTCGAGT
CCCGTGCGCC GGCAGGCGCT GGAGAAGTCG CGCGACTCCG GTCTCGCCGT CGTGTCGGGC
AAAGTGCAGC TGGCGTCGGA TTCGGACGCA CAGCCCGTGG CAGGCTTCGT GATGTATCTG
CCTGTCTATG AACGCGGCGC GCCGCAAGAC ACCGTCGACG AGCGCCGCGC GCATCTGCTC
GGCTGGGTCT ACGCGGCTTT TCGCATGCGC GACGTGCTGG CGAGTCTCTA TGGCGATCAG
CCTGCCGGGC TTTACCTGTC GATTTACGAC GGCACGCAGC CGTCGGCGGA ATCGTTGTTG
TACCGCTCGT CGGAGCCGAA GCTGCGCGAC GTGGTTTCAG CGAACGAATA CCTCGTGGTC
GGCGGACACG ACTGGACGCT GTCGATGACG GCGCAGCCCG ACTTCAAGGC ACGCTTCGGC
CACAATGCGA AGCTGCTGAT TGCCTGCACG GGCGCGGGCC TGAGCCTGCT GCTCGCGCTG
CTTGCCTGGA GCCTCGCGAG CGGCCGCAGC CGCGCGATGC GTCTCGCGTC GAAGATGACA
GCCGAAGTAC GCGAGAGCGA GGCCGAATTG CGCATTGCCG CCGTCGCGTT CGATTCGCTC
GAGGGCATGA TGGTCACCGA CGCCGACGGC ACGATCCTGC GCGTCAATTC GGCGTTCACC
AAATGCACGG GCTATACGGC CGACGACGTG ATCGGCAGGA ACCCGCGCCT GCTCAGCTCG
GGCCGTCACG ATGCCGCGTT CTTCCGCGAC ATGTGGGAGA CGATCCACCG TGTGGGCGGA
TGGCAGGGCG AAATCTGGGA TCGCCGCAAG AACGGCGAGA TCTATCCGAA GTGGCTGACC
ATTACCGCGG TGAAGGCCGT CGACGGCAAT GTCACGCATT ACGTCGGCAC GCACTACGAC
ATCACGGAGC GCAAGCTCGC GGAAGAGCAG ATCAAGGAAC TGGCGTTTTT CGACGCGCTC
ACGCATCTGC CGAACCGCAC ACTGTTGCGC GACCGGCTGA AGCAGGTGAT CGCGCTTAGC
GCGCAGAACC ATACGCACGG CGCGCTGCTG TTCGTCGACC TCGACAACTT CAAGACGCTC
AACGACACGC TCGGCCACGA CAAGGGCGAC CTGTTGCTGG GCCAGGTCGC GGTGCGGCTG
CTGGGGAGCG TGCGTGAGGG CGATACGGTG GCGCGGATGG GCGGCGACGA ATTCGTGATT
GTGCTGAGCG ATCTGAGCCG CAATCGCGAC GAAGCCGCCA GCGAGACGGA GGGCGCCGCT
GAAAAGGTGC TGACCGCGCT CTCCAGACCC TACTACCTCG CGGGCACGGA GTTCCGGACA
ACCGCGAGCA TCGGCGCGAC GCTGTTCACT GGGCATGAAA CGTCGATCGA CGAACTGCTG
AAGCAGTCGG ATCTCGCGAT GTACAAGTCA AAGGAAAGCG GCCGCAACGC AATCTGTTTC
TTCGACCCGG CGATGCAGAC GGTCGTGATG GAGCGCGCCG CGCTCGAAGC AGCGTTGCGC
CGCGCAATCG ACGAAGACCA GCTGCTGGTG CACTACCAGG CGCAGGTGCT CAATGGCAAC
CGCGTGACGG GCGCGGAGGC GCTGGTGCGC TGGCAGCATC CGCAGCATGG ACTCGTGCCG
CCCGCCGAGT TCATCCCGCT CGCCGAAGAG ACGGGGCTGA TCCTCGCGCT CGGCGACCGG
GTGCTCGACA CGGCGTGCCG GCAGCTCGCG CAATGGTCGT TGCGCCCGGA CCGTGCGCAT
CTGTCGATTG CCGTCAACGT GAGCGCGCAA CAGCTTCGCG AGAACAGCTT CGTGACCAGC
GTGCTCGAGG CGCTGGCGCG CACGGGCGCC GATCCGAGCC GTCTGAAGCT CGAACTGACG
GAGAGCGTGC TGGTCGACAA CGTCGAGGAC ATCATTCGCA AGATGACGCT GCTGCGCACC
AAGGGCGTGG TCTTTTCGCT CGACGACTTC GGCGTCGGCT ACTCGTCGCT GTCGTATCTG
AAGCGCTTGC CGCTTGGGCA ATTGAAGATC GACAGGTCGT TCGTGCGCGA TGTGCTCGAC
GATCCGAACG ACGCCGTGAT CGCGCGCGCG ATCGTCGCGC TCGCGCAAAG TCTTGGGCTT
GGCGTGATTG CCGAGGGCGT CGAGACGCAG GCGCAACGGC AGTTCCTCGC CGACGCCGGG
TGCCACGCAT ACCAAGGCTA TCTGTTCTGC CGGCCGCTGC CGATCGAAGA CTTCGAGGCG
TTCGCCGATA CATTCGATTC GCGGGAGTCG GCGCTCGAAA CGCCCTGA
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| Protein sequence | MSRARLVLLP LVILLTGLTI TWSVWDHERQ AVRRELLSEF NFALGDAVSR VEQRMATYEQ
MLRGVQGMFA ARGSLDLDAF HGYIGAVNAD SSVAGMQALG VVQWVSAQRH DAHLAEMNRR
IGRRYAIRPP GVRDGYAPVV AREPVYADPN AVLGYDTWSS PVRRQALEKS RDSGLAVVSG
KVQLASDSDA QPVAGFVMYL PVYERGAPQD TVDERRAHLL GWVYAAFRMR DVLASLYGDQ
PAGLYLSIYD GTQPSAESLL YRSSEPKLRD VVSANEYLVV GGHDWTLSMT AQPDFKARFG
HNAKLLIACT GAGLSLLLAL LAWSLASGRS RAMRLASKMT AEVRESEAEL RIAAVAFDSL
EGMMVTDADG TILRVNSAFT KCTGYTADDV IGRNPRLLSS GRHDAAFFRD MWETIHRVGG
WQGEIWDRRK NGEIYPKWLT ITAVKAVDGN VTHYVGTHYD ITERKLAEEQ IKELAFFDAL
THLPNRTLLR DRLKQVIALS AQNHTHGALL FVDLDNFKTL NDTLGHDKGD LLLGQVAVRL
LGSVREGDTV ARMGGDEFVI VLSDLSRNRD EAASETEGAA EKVLTALSRP YYLAGTEFRT
TASIGATLFT GHETSIDELL KQSDLAMYKS KESGRNAICF FDPAMQTVVM ERAALEAALR
RAIDEDQLLV HYQAQVLNGN RVTGAEALVR WQHPQHGLVP PAEFIPLAEE TGLILALGDR
VLDTACRQLA QWSLRPDRAH LSIAVNVSAQ QLRENSFVTS VLEALARTGA DPSRLKLELT
ESVLVDNVED IIRKMTLLRT KGVVFSLDDF GVGYSSLSYL KRLPLGQLKI DRSFVRDVLD
DPNDAVIARA IVALAQSLGL GVIAEGVETQ AQRQFLADAG CHAYQGYLFC RPLPIEDFEA
FADTFDSRES ALETP
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