| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3690 |
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| Symbol | |
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| ID | 6245232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | + |
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| Start bp | 637292 |
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| End bp | 639286 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642595460 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001859871 |
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| Protein GI | 186472529 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.556111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCAAAGC TTGACCGGGA CAACTCCCAG TTCGAAACCA CCGCAGCGAA AACCCCCAAG
CGCGCAGCAA AGGCCAAGGC GCAACCCGCC GCGCCGCAAG ACTCGGCCTT GATGGAATCT
CTCGCTGAAG AACGTCAACG TCAGATGCGC GCACTGATCG CGCTGGGCCG CGAGCGCGGC
TATTTGACGC ATGCCGACAT CAACGACCAC CTTCCCGACA ATTTCACCGA AACGGCCGCG
ATGGAAACCA TCGTCAGCAC GTTCGGCGAA ATGGGCGTCT CCGTATACGA AACGGCGCCC
GACGCGGAAA CGCTGTTGCT GAACGACGGG CCGTCGGCGG CCGCATCGGA CGATCAGGCC
GATGAAGAAG CCGAGGTCGC ACTGTCCACC GTCGACTCCG AATTCGGGCG CACCACCGAC
CCGGTGCGCA TGTACATGCG TGAAATGGGC GCGAGCGAGC TGCTGACGCG CGCCGGCGAA
ATCGAAATCG CCAAGCGCAT CGAAGGCGGC CTGCAGGACA TGGTGCAAGC CATCGCGATG
TGCCCGTCCA TCATCGCGAC GATTCTCGCG GACGTCGACC GCGTCGTGGC GGGCGAAATC
CGCATCGACG AGCTGGTCGA CGGCATCAGT GACACGACGG AAGCCGCCGA ACTCGACGAC
GACTCAGCCG AAGCCGCCGC TGAAGAAGAA CTGGAAACGA GCGCCTCGGA CGACGATTCC
GACGACGAAG ACGGCGATCT TTCCGACGAT GGCGGCGAAA AGGCCAATGC CGCGCGCCTC
GAACAGCTGA CGGCGGACAG CCTCGCGATC TTCGAGCGCG TGCGCGCTCT GTTCGCCAGC
GTCCCCGACA TGCCCGTCAC GGACAAGCGC CGCGCCACGG CCATCGCGAA TCTGCGCGAG
TCGATCCAGC AGGAACTCAC GCCGATCCGC TTCACGGCGA AGACCATCGA CCGCTTGTGC
GCGGAAGTGC AGGCGCAGGT CGCGCAGGTT CGCGCGATCG AACGCAGCAT CCTGCAGATC
GCGGTGGACC GCTGCGACAT GCCGCGCGAG ACGTTCGTCG AATCGTTCCC GGGTAACGAA
ACGGATCTCG ACTGGACGAT GCGCGTCGCC GCGAAGTCGA AGACCTACGG CCCCGCGCTC
GAGCGTCACC TGCCCGCCAT CCAGTCGGAA CAGCAGAAGC TCGTCGACAT CGAAGCGTCG
ATCGCGCTGC CGCTGCAACA ACTGAAGCAG ATCAACAAGC AGCTCGGCTC GGCTGAATCG
AAGATGCGCC AGGCCAAGCG CGAGATGATC GAAGCGAACC TGCGTCTCGT GATTTCGATC
GCGAAGAAGT ACGTGAATCG CGGCATGCAC TTCCTCGATC TGATCCAGGA AGGCAACATC
GGCCTGATGA AGGCGGTGGA CAAGTTCGAA TACCGTCGCG GCTGGAAGTT CTCGACGTAC
GCAACGTGGT GGGTCCGTCA GGCCATCACG CGCGCAATCG CCGACCAGGC ACGCACCATT
CGTGTGCCGG TTCACATGAT CGAGTCGATC AACAAGCTGA ACCGCATCCA GCGCGAGATC
GTGCAGCAGA CGGGCCAGGA GCCGCATCCC TCCGTCCTCG CCGAACGCAT GGACATGCCT
GAAGCGAAGA TTCGCAGCAT CCTGAAGATC GCGAAGAACC CGGCCTCGCT GGATTCGCCC
GTCGGTGAAG ATGCCGACAC GACGCTCGGC GACATGATCG AAGACACGTC GGCAACATCG
CCCGCCGACG CCGCCGTGCA TGCGAACATG CGCCGCGCGA TCGACGAAGC GCTCGACGCG
CTCACGCCGC GCGAGGCGAA AGTGCTGCGC ATGCGTTACG GCATCGACAC GGCTTCGGAA
TTGACGCTCG AAGAAGTGGG CCGCCAGTTC GACGTGACGC GCGAACGTAT CCGCCAGATC
GAAGGCAAGG CGATCCGCAA GCTCAATCAC CCGAGCCGCG CGGACAAGCT GCGCCCGTTC
CTCGAACGCA GCTGA
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| Protein sequence | MAKLDRDNSQ FETTAAKTPK RAAKAKAQPA APQDSALMES LAEERQRQMR ALIALGRERG
YLTHADINDH LPDNFTETAA METIVSTFGE MGVSVYETAP DAETLLLNDG PSAAASDDQA
DEEAEVALST VDSEFGRTTD PVRMYMREMG ASELLTRAGE IEIAKRIEGG LQDMVQAIAM
CPSIIATILA DVDRVVAGEI RIDELVDGIS DTTEAAELDD DSAEAAAEEE LETSASDDDS
DDEDGDLSDD GGEKANAARL EQLTADSLAI FERVRALFAS VPDMPVTDKR RATAIANLRE
SIQQELTPIR FTAKTIDRLC AEVQAQVAQV RAIERSILQI AVDRCDMPRE TFVESFPGNE
TDLDWTMRVA AKSKTYGPAL ERHLPAIQSE QQKLVDIEAS IALPLQQLKQ INKQLGSAES
KMRQAKREMI EANLRLVISI AKKYVNRGMH FLDLIQEGNI GLMKAVDKFE YRRGWKFSTY
ATWWVRQAIT RAIADQARTI RVPVHMIESI NKLNRIQREI VQQTGQEPHP SVLAERMDMP
EAKIRSILKI AKNPASLDSP VGEDADTTLG DMIEDTSATS PADAAVHANM RRAIDEALDA
LTPREAKVLR MRYGIDTASE LTLEEVGRQF DVTRERIRQI EGKAIRKLNH PSRADKLRPF
LERS
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