Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_3351 |
Symbol | |
ID | 6244781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010623 |
Strand | - |
Start bp | 287700 |
End bp | 289373 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642595140 |
Product | NERD domain-containing protein |
Protein accession | YP_001859552 |
Protein GI | 186472210 |
COG category | [R] General function prediction only |
COG ID | [COG3972] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.164276 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.000169391 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCCCGCA TTGTTCCCGA CGACTGGAAA AGCCTCGCCA CCACGGGCGC CGCCGCGCGC GAGCGCGAAA CGCTGGCGTT GCTCGAAGAA GCGCTGCCGC GCGACTACAC CGTCTATCAC GGCGTGCACT GGACGCGGCT GCACGAAGGG TTCTCCGTCT TCGGCGAGGC CGACTTCGTG ATCGTGAGCC CGTCGGGGCG CGTGATGATC GTCGAGCAGA AAACCGGCTT CCTGCGCGAA ACGCCCAAAG GGCTCGTCAA GGTCTACATG CAGACCGAGC GCAATGTCGC GATCGCGCTC GCGCGCACGA TCGAAGGGCT GCACCGGCGC TTCACGGCGG CCTTCGGCGC GGGCACCTAT TTCATCGAAG AGCTGCTGTA TTGTCCTGAT CACGTGGTCC GGGACGCGGC CATCGCGGGC GTGAACCCGG CGCGCATCGT CGACGCGACG CGCAAGGACA GTCTCATCGA GACCATACGC ACGGCGCTGC CCGGCGACGA GCCGCGACTC GCGTGCGCGT CGAAGATCCA CCATTTTCTC GCCGACGAAC TCGCGCTCTC GCCCGACGCG AGCGCGCTGG TCGGTCAGGC AGGCACGCTC GTCACGCGGC TCGCGGGCGG GCTGGCGACA TGGGCGCGGC GGCTCGAATT CTCGCCGTTC CGGCTGCGCG TGATCGGCAC CGCGGGCTCG GGCAAGACGC AACTGGCCGT GCAGGTAATG AAGGACGCCG TCGCGCGCGG CGAGCGGCCA CTCTACGTGT GCTTCAACCG GCCGCTGGCG GATCACATCG CGCGCGTCGC GCCGCCGCAG GCGAAGATCG CGAACTATCA CCAGCTATGC GACTGGATCG TGCGGGAAAG CGGCCGTGCC CCGGATTTCC AGAGCAACGA CGTGTTCGAC CAGCTCGAAA GCGCCTTCGC TGCGACGCCG ATCGATACCG GCTGGCAATA CGACGTGCTG ATCGTCGACG AAGGGCAGGA TTTCCAGCAG CCGTGGGTGC CCGCGCTCGA ACGGCTGCTG AAGCCGGGCG GCGCGTGGTG GTGGCTCGAA GATCCGCTGC AGAATCTGTA CATGCGCGAG CCCGTCGCGC TGCCCGGCTG GACGGTACTG CGCGAATCGA CCAACTACCG CAGTCCGCGA GACATCCTCG GCTATCTGCG CAACGTCGTC GGCGCGACGG TGCCGCTGGC GGGCAGCCTG ACGGCGGGCG GGCCGTTCGA CGGCTCCGAC ATTTCGCTGT CGACCTACGA CGAGACCCAG ACGCCCGAAA GCTGCATCGA TGCGACCAAG CGCGCGATCA CGCAGGCGCT CGCGCTCGGC TTTCGCAAGC AGGACATTGC CGTGCTGTCG TTTCGCGGAC GCGAAGGCTC GGTGCTGTGG CCGCTCGATC ACCTCGGCCC GCACCGGCTG CGCAGCTTCA CGGGCAAGTA CGATCTGTTC GGCAATCCCG CTTACCGGGA GGGCGACGTG CTGCTCGACT CGATCTACCG CTTCAAGGGG CAGTCGGCGC CGTGCGTGAT CCTGAGCGAA GTGGATTTCG ACGCGTTCGA CGAACGCAAC GCGCGCAAGT TGTTCGTCGG CGCGACGCGC GCGACGATGA AGCTGATCGT GGTCGCGTCG CAGCGCGCCG CGCGGCATCT GCAACTGGGC GAGGCGAAGG AGCAGGTGGC CTAG
|
Protein sequence | MARIVPDDWK SLATTGAAAR ERETLALLEE ALPRDYTVYH GVHWTRLHEG FSVFGEADFV IVSPSGRVMI VEQKTGFLRE TPKGLVKVYM QTERNVAIAL ARTIEGLHRR FTAAFGAGTY FIEELLYCPD HVVRDAAIAG VNPARIVDAT RKDSLIETIR TALPGDEPRL ACASKIHHFL ADELALSPDA SALVGQAGTL VTRLAGGLAT WARRLEFSPF RLRVIGTAGS GKTQLAVQVM KDAVARGERP LYVCFNRPLA DHIARVAPPQ AKIANYHQLC DWIVRESGRA PDFQSNDVFD QLESAFAATP IDTGWQYDVL IVDEGQDFQQ PWVPALERLL KPGGAWWWLE DPLQNLYMRE PVALPGWTVL RESTNYRSPR DILGYLRNVV GATVPLAGSL TAGGPFDGSD ISLSTYDETQ TPESCIDATK RAITQALALG FRKQDIAVLS FRGREGSVLW PLDHLGPHRL RSFTGKYDLF GNPAYREGDV LLDSIYRFKG QSAPCVILSE VDFDAFDERN ARKLFVGATR ATMKLIVVAS QRAARHLQLG EAKEQVA
|
| |