| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3186 |
|---|
| Symbol | |
|---|
| ID | 6244871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 95489 |
|---|
| End bp | 96628 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642594982 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001859394 |
|---|
| Protein GI | 186472052 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.501929 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG TACCCCTGAA GAAGCGGATC GCGGTGGCTT CGGCTGTCGC CAGTTTGGCT
GCGGCCATAC CTCAGCTGGC GCAAGCACAA AGTTCGGTCA CACTTTATGG CCTGATATCC
ACCGGTATCC TATACACCTC AAACTCAGGA GGTAAGTCGG TCGTCTCAAT GGCCAGCGGG
CCAGAGCAGT TGCCGCGTAT GGGCCTGAAA GGGCGGGAGG AGCTAGGTGG GGGAACTGCC
GCGATATTCA CGTTGGAAAA CGGCTTCAAT TCGGTGAATG GCTCGTTGGG TCAGGGCGGC
CGAATGTTCG GGCGATGGGC CTACGTTGGC CTGACCAACA ATACCTACGG TACGGTGACG
GTCGGCCGTC AGCTGGAGGA AATGGCACAG CAGTTGTACT GGAGTGAATC GGGTGTGATC
TTCGCGGCCT TCGGGACGCG TATCGGGGAC AACGACAACA TCTTCAACTC AAATCGGTTC
AATAACTCGA TCCGCTATGC GTCGCCGAAC ATTCACGGGC TGACGTTCGC GGGATCATAC
GCGTTCTCGA ACCAGGTGGG TGGATTCTCG AACAACAATG GATACAGCTT TGGTGCAAAC
TACGTATCCG GCTCCCTCAA GCTCGGGGCG GCATTTACTC AGTTCAATCA TCCTGCGGTG
GCGTCGAATC TGAATGGTGC GGTCGACGAC GGTTCATGGG GATTTTCCAA CCCATTCGTA
AAGAGCCTTG GTGGCGCGGT GACTGCCCAG CAACGCATCA TGGGCGTAGG TGCGAGCTAC
AATTTCAATA TCGTGCAGGT TGCGGCTGGC TATACCAATG TCCTCTACAA CTATCTGGAT
AATACCGGGC TTCGATTGCA GAACGCAGAG CTCACTGTGA CCAAGCAGAT CACGCCGACC
ACCCTTATCG GAGCGGGCTA CATCTTTACT GCAGGCAACT ACTCGGCAGA TCGGCAACCG
CGTTATCACC AGGTCAATCT GGGGAGCGTA TATTCACTGA GCAAGCGCAC AGACCTTTGG
CTGGTCGGCA TGTATATGCA CGCTGCGGGC GACGCGCACC ATGCGCAGAT CTATACGACT
ACTGCGTCAA GCACGCAAAA CCAGATGGCA GTGGTGACAG GCATCAGGAC GAGGTTTTAA
|
|---|
| Protein sequence | MKRVPLKKRI AVASAVASLA AAIPQLAQAQ SSVTLYGLIS TGILYTSNSG GKSVVSMASG
PEQLPRMGLK GREELGGGTA AIFTLENGFN SVNGSLGQGG RMFGRWAYVG LTNNTYGTVT
VGRQLEEMAQ QLYWSESGVI FAAFGTRIGD NDNIFNSNRF NNSIRYASPN IHGLTFAGSY
AFSNQVGGFS NNNGYSFGAN YVSGSLKLGA AFTQFNHPAV ASNLNGAVDD GSWGFSNPFV
KSLGGAVTAQ QRIMGVGASY NFNIVQVAAG YTNVLYNYLD NTGLRLQNAE LTVTKQITPT
TLIGAGYIFT AGNYSADRQP RYHQVNLGSV YSLSKRTDLW LVGMYMHAAG DAHHAQIYTT
TASSTQNQMA VVTGIRTRF
|
|---|
| |