| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3134 |
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| Symbol | |
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| ID | 6244825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 28957 |
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| End bp | 31275 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642594936 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001859348 |
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| Protein GI | 186472006 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCGTC AAGTGACTGC AGACATCGCG ACTGACAAGC CGGCCGGCCG CACTCGCCAC
GGCGCGGATC TGGCCGCCGA GGTGCGCGCG TCGGAACAGA GCGTCTTGCG CCTGCTTACG
CGCAGCACGC CGCTGCCCGA ACTGCTGGCA GAGGTATGCC GCCGTGCCGA AACGCTGCTC
GGCGAGGGCG CACGGTGCTC GATACTCGTG CTCGACACCG ACGGCTTTAC CGTGCGCGTC
GGCGCGGCGC CGTCGCTGCC GCCACAGTAC AGCGCGGCCA TCGACGGCAT GCGCTTGGGT
CCATGCGCCG GCTCGTGCGG CACGGCGATG CACGACCGGC GCCTTGTGAT TGTCGAGGAC
ATCGAACGCG ATCCGCTGTG GGCGGACTAT CGGCATCTCG CGCTGCCGCT CGGGTTGCGC
GCCTGCTGGT CGGTGCCGTT CGAAGACGAC GCGGGCCAGG TGCTCGGTGC GTTCGGCGTC
TACTACGACA GGCGCCGCCG CCCCAACGAC GGCGAACAGG CGCTGCTGCG CGAGATCGGC
CAGAGCGTCG GGCTGGCCGT TCATCAGGAT CTGATGCGCA AGCGGCTCGC GCAGAGCGAG
GAGCATCACC GGCTGGTCGT CGATCATCTG AACGAAGGCA TCGTCGTGCA GTCGCGCGAA
GGGGTGGTGC TCGCCTGCAA TCCGAGCGCG CGGCGCATGC TGCGCGCGAC GGGCGAGGTG
ATTGGCCGGG ACATCTACAA GGTGATTCGC GCGGCTTTCT GGGACGACGG TTCGCCCGTC
GAAACGGCGG AGCAGCCGAC GCGGCGTGTG TTGCGCACGG GCCGGCCCGT GGTCGGCATC
ACGCTGCGTC TCGAACTGGT GGGCGGCGGC TCGATCTGGA TCACCGAGAA CGTCGTGCCT
ATCTTCAAGC GGGGAGAAAC CGAAGCTGGC GCCGTGCTCG TTTCGTTCAA TGACATCAGC
GCGGTGCAGG CTGCGCGTGC GCAACTGCAG TATCTCGCGA CGCGCGACTC GCTGACGGGA
CTTTATAACC GCGCCTATCT CGCCGACCGC ATGAGCGAGC GGCTTGCGCC GCATACGAGC
GCCGCCGCGC ACGGACGCGG AGAGCCGCGA GCCGCTGCGC GCAGGCTGGC GGTGCTGTTC
GTCGATCTGG ACGGCTTCAA GAAGGTCAAC GACATCGCCG GCCACGAAGC GGGCGATGCG
CTGTTGTGCA GCGTCGCCGC GCGGCTCGCC GGCTGCGTGC GCAGCGAGGA CACGCTCGCC
CGGGTGGGCG GCGACGAGTT CGTGATCGCG ACGGGCGATT ACACCGACGC GTCGTTCCTG
ACTTCGCTCG CGCAACGGGT GCTCGACACG ATCGCGCGGC CGTTCGCGGT CGGCGGCAAC
GAGTATTACC TCGGTGCGTC GATCGGCATC AGTCTGTTTC CCGACGACGG ATGCGACGCG
CAGACACTGA TGCGCAACGC CGACTCCGCG ATGTACGACG CGAAGCAGCG CGGCCGCCAC
AACTTCCAGT TCTTCACGGC GGAATTGAGC CAGCGCCTGA AGCGGCGCTT CGGCATCGAG
CAGTCGTTGC GCCGCGCGCT CGCCGCCGGC GAGCTGAGCC TCGCGTACCA GCCCATCGTC
GAGGGCGCGA CGGGGCGCAT CGTGGGCGCC GAAGCGCTGC TGCGGTGGCG CAACGACGAG
CTGGGCCAGG TGTCGCCCGT CGAATTCATT CCCGTCGCGG AGGACACGGG CATGATCATC
GATATCGGCC GTTGGGTGCT GGAGAACGCA TGCCGTCAGG CCGTCGAATG GCGCAGGACG
ATCACGCCGC ATCTGATGAT CGCGGTGAAT CTCTCGCCGC GCCAGATCAA CGGCGAACTG
ATCGGCCATG TCGCGGCAAC TCTGGAACAG ACGGGGCTGG AGCCGTCGGC GCTCGAACTC
GAAATCACGG AAGGCGTGCT GATGAGCGAC AGCGAATCCG TCATGCCGCT TCTGACGACG
CTCGCCGGCA TGGGCGTGCG CATTTCCGTC GACGATTTCG GCACCGGCTA TTCGTCGCTG
TCGTATCTGA AGCGCTTTCC GCTGCACAGC CTGAAGGTCG ACCGGTCGTT CGTCGCGGGC
TTGCCCGGGC ATCGCGATGC TGTGGCGATC ACGCATGCCG TCGTCGCGAT GGCGCACTCG
CTCGGCATGA GCGTGACGGC CGAAGGCGTC GAGACGAGCG AGCAGTCGGC GTTTCTGCGC
TCGATCGGAT GCGAACGGCA ACAGGGCTAT CTGTTCGGAC GGCCCGTCGT GCCGGGCGAC
TTCGCGCGCG AAGCGCAACG GCTGCATGCG GGAACCTGA
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| Protein sequence | MSRQVTADIA TDKPAGRTRH GADLAAEVRA SEQSVLRLLT RSTPLPELLA EVCRRAETLL
GEGARCSILV LDTDGFTVRV GAAPSLPPQY SAAIDGMRLG PCAGSCGTAM HDRRLVIVED
IERDPLWADY RHLALPLGLR ACWSVPFEDD AGQVLGAFGV YYDRRRRPND GEQALLREIG
QSVGLAVHQD LMRKRLAQSE EHHRLVVDHL NEGIVVQSRE GVVLACNPSA RRMLRATGEV
IGRDIYKVIR AAFWDDGSPV ETAEQPTRRV LRTGRPVVGI TLRLELVGGG SIWITENVVP
IFKRGETEAG AVLVSFNDIS AVQAARAQLQ YLATRDSLTG LYNRAYLADR MSERLAPHTS
AAAHGRGEPR AAARRLAVLF VDLDGFKKVN DIAGHEAGDA LLCSVAARLA GCVRSEDTLA
RVGGDEFVIA TGDYTDASFL TSLAQRVLDT IARPFAVGGN EYYLGASIGI SLFPDDGCDA
QTLMRNADSA MYDAKQRGRH NFQFFTAELS QRLKRRFGIE QSLRRALAAG ELSLAYQPIV
EGATGRIVGA EALLRWRNDE LGQVSPVEFI PVAEDTGMII DIGRWVLENA CRQAVEWRRT
ITPHLMIAVN LSPRQINGEL IGHVAATLEQ TGLEPSALEL EITEGVLMSD SESVMPLLTT
LAGMGVRISV DDFGTGYSSL SYLKRFPLHS LKVDRSFVAG LPGHRDAVAI THAVVAMAHS
LGMSVTAEGV ETSEQSAFLR SIGCERQQGY LFGRPVVPGD FAREAQRLHA GT
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