| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3070 |
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| Symbol | |
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| ID | 6244549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010622 |
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| Strand | + |
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| Start bp | 3448683 |
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| End bp | 3451046 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642594872 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001859284 |
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| Protein GI | 186477814 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00279328 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAGAA ATCGTATGGC ATTGCGTCGC GTCGCGATGG CGTTGCTGGT CGCTGGAACG
ATCACCTCGC AGATCGCGCA CGCACAGGTG ACGCTCAATT TCGTGAACGC CGACATCGAT
CAGGTGGCGC GGGCGATTGG CGCGGCCACG GGAAAGACGA TCATCGTCGA CCCGCGCGTG
AAAGGGCAAC TGAACCTGGT TTCCGAAAAC CCAGTTCCGG AAGATCAGGC GCTGAAGACC
TTGCAGTCCG CACTGCGGAT GCAGGGCTTT TCGCTCGTGC AGGATCACGG CGTGCTGAAG
GTCGTACCTG AAGCGGACGC GAAGCTTCAG GGCGTGCCGA CCTACGTCGG AAACGCACCC
GCGGCGCGCG GCGATCAGGT GGTCACGCAG GTCTTCCAGC TGAAGAACGA ATCGGCCAAC
AACCTGCTGC CCGTGCTGCG TCCGCTGATC TCGCCGAACA ACACGGTTGC GGCGTATCCG
TCGAACAACA CGATCGTCGT CACGGACTAT GCGGACAACG TGCGCCGCAT CGCGCAGATC
ATCGCGGGCG TCGATACGGC GGCCGGCCAG CAGGTGCAGG TTGTGCCGCT GAAGAACGCG
AATGCGATCG ACGTCGCCAC GCAGATGGCG AAAATGCTCG ATCCCGGTAC GATCGGCAAC
ACGGATGCGA CACTGAAGGT CTCCGTCCAG GCCGATCCTC GCACCAATTC GCTGCTGTTG
CGCGCGTCGA ACGCGGGGCG TCTCGCGGCG GCGAAGTCGC TCGCGAAGCA ACTGGATGCT
GCAACCGGCC AGCCCGGGAA CATGCACGTC GTGCCCTTGC GCAACGCAGA CGCCGTGCGT
CTCGCGAAGA CGCTGCGCGG CATGCTCGGC AAGGGTGGCG GCGGCAACGA ATCGTCGTCG
TCTTCAGGTG GCAGCAGCGC TGCGAACTCG TTCAACCAGA ACAATTCGCC CTCGTCGACG
GGCACCTCCG GCAACCCGCC TTTACCGTCG GGTTCGATGG GCGGTCAGTC GTCGTCATTG
GGCAGCAATC CGCTGGGCGC CGGCGGCGGC GGGGCCGGCG GCGGCTATGG CGGCCAGGGT
AGCAGCAACG ACTTTCTCGG CGAGAAGGAA AGCAGCAACG AAGACAATCA GCCGGGCGGC
ATGATCCAGG CCGACGCGTC GACGAACTCG CTGATCATCA CTGCGTCAGA CCCGGTTTAC
CGCAATCTGC GCACTGTGAT CGACCAGCTC GACATCCGCC GTCCTCAGGT CTATATCGAA
GCGCTGATCG TCGAACTGAA CTCGAATACG AACGCCAACC TGGGCATCCA GTGGCAGATC
GGCAGCGGCA ACGTGTTCGC GGGCACCAAC CTTGCCACGG GCAGCGGCAA CAGCATCATC
AACCTGACGG CGGCTGCGGC CACGGGCGGC ATCGCGAGCG CGCTTGCGAC GCAAAATCTC
CAGCAAGGCT TGAACGTCGG CTGGGTGCAT AACCTGTTCG GCGTGAACGG GCTCGGCGCG
TTGCTGCAGG CGCTGTCGCA GACGGCCGAC GCCAATGTGC TGTCCACGCC TAACCTCATC
ACGCTCGACA ACCAGGAAGC GAAGATCGTC GTGGGCACGA ACGTGCCGAT CCAGACAGGC
TCCTATTCGA ACCTGACGAG CAGCACGGCG ACCACTGCGT TCAACACATT CGACCGTATC
GACGTGGGTC TGACGCTGCA CATCAAGCCA CAGATCACTG ATGGCGGCAT CCTGAAGCTG
CAGTTGTACA CGGAAGATTC GGCGATCGTG GCAGGCACGA CCAACGTGAC GACCAACCCG
GCCGGCCCGG AATTCACGAA GCGTTCGATC CAGTCGACCG TGCTGGCCGA CAACGGCGAG
ATCATCGTGC TGGGGGGCCT GATGCAGGAC AATTACCAGG TCACCAACAG CAAGGTGCCG
CTGCTCGGCG ACATCCCGTG GATCGGCCAG CTGTTCCGCT CGGAAAACAA GACCCGCGCG
AAGACGAACC TGCTGGTGTT CCTGCGTCCG GTGATCATCG CCGACCGTGC GACGGCGCAA
GCGGTGACGG CGAACCGCTA TGACTACATC CAGGGCGTGA CGGGTGCGTA CAAGTCGGAC
AACAATCTGA TCAGGGACAA GGACGATCCC GTGGTGCCGC CGATGCCCGT TGGCCCGAAC
GAGGGCGGAT CGACGTTGAA TCTGTTCGAT CTCGACAAGA TGCGGCGTGA ACAGGCGCTT
GGCGTGCCGC CGCAGCAGCC GCAAATGCAA CCGCAGGTTC AGCCCCAAGT TCAGCCGCAG
ACGCAACCGC AGCCGCTGCA GGTCGAACCG GCGCAAACCG TGCCGGCTCA ACCGGCCACG
AGTACGCAAA AGGTGCAGCC GTGA
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| Protein sequence | MRRNRMALRR VAMALLVAGT ITSQIAHAQV TLNFVNADID QVARAIGAAT GKTIIVDPRV
KGQLNLVSEN PVPEDQALKT LQSALRMQGF SLVQDHGVLK VVPEADAKLQ GVPTYVGNAP
AARGDQVVTQ VFQLKNESAN NLLPVLRPLI SPNNTVAAYP SNNTIVVTDY ADNVRRIAQI
IAGVDTAAGQ QVQVVPLKNA NAIDVATQMA KMLDPGTIGN TDATLKVSVQ ADPRTNSLLL
RASNAGRLAA AKSLAKQLDA ATGQPGNMHV VPLRNADAVR LAKTLRGMLG KGGGGNESSS
SSGGSSAANS FNQNNSPSST GTSGNPPLPS GSMGGQSSSL GSNPLGAGGG GAGGGYGGQG
SSNDFLGEKE SSNEDNQPGG MIQADASTNS LIITASDPVY RNLRTVIDQL DIRRPQVYIE
ALIVELNSNT NANLGIQWQI GSGNVFAGTN LATGSGNSII NLTAAAATGG IASALATQNL
QQGLNVGWVH NLFGVNGLGA LLQALSQTAD ANVLSTPNLI TLDNQEAKIV VGTNVPIQTG
SYSNLTSSTA TTAFNTFDRI DVGLTLHIKP QITDGGILKL QLYTEDSAIV AGTTNVTTNP
AGPEFTKRSI QSTVLADNGE IIVLGGLMQD NYQVTNSKVP LLGDIPWIGQ LFRSENKTRA
KTNLLVFLRP VIIADRATAQ AVTANRYDYI QGVTGAYKSD NNLIRDKDDP VVPPMPVGPN
EGGSTLNLFD LDKMRREQAL GVPPQQPQMQ PQVQPQVQPQ TQPQPLQVEP AQTVPAQPAT
STQKVQP
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