| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_2997 |
|---|
| Symbol | |
|---|
| ID | 6244478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 3358300 |
|---|
| End bp | 3360426 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642594800 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001859213 |
|---|
| Protein GI | 186477743 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0127987 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCGC CCCCCGATCA CGACTCACGC ACGAACGGCG ACGTCCCAAT GGACGCGACC
GCGCACGCAC CCGCGCCGCT GCCGGACTTC GATGCGTCCG CCATGTTGCA AGCTGCCTTC
GCGCATCACC AGGCGGGCCG CACGGGCGAA GCCGCCGAAT GCTACAAACA GATTCTCCAG
CACGACGGGA TGCACCCGGA TGCAATGCAT TTTCTCGGCG TGCTCGCTTG CGACGTCGGT
AATCTGCCAG CGGGCATCGA CCTGATCGAA AAATCGATCC AGCTGCATCC GAACGCGATC
TATCTGAACA ACCTCGGCAA CATGCGCGGC CGCGCGCGCG ACCTTCAGGG CGCGATCGCT
GCGTATCGCG CGGCGCTTTC GCTCGCGCCC GATTACGCGC AAGCGCACAG CAACCTCGGC
CACACGCTGC GCGAAGCGGG CGATCCGGCG GCGGCGATCG ACAGCTGCAC GGTGGCCACG
CGTCTCAAGC CGGATCTCCC GCAAGCTTGG ACCCATCTCG GCAACGCGTT GCTGGAACTC
GGCAGCGACG AGGGCGCGCT GGACAGCTAC ATGAAGGCGC TCGCGCTCCA GCCCAACGAT
GCGAACGCGC ATAACAACGT CGGCAACATT CTGGAGAAGT ACGGCCGCGC AGCGGGCGCG
GCCGAGTCGT ATCGCCGCGC GCTCGCGCTC GAACCGCACC GCGCGTCGCT GCACAACAAT
CTCGGCAATG TGCTGCGCGA TCAGGGCCAG CTCGATCAGG CGACAGCGTG CTACCGGCAG
GCCGTCGCGC TCGATCCCGG TTTCGCGCAG GCGCACAGCA ACCTGCTGCT GCTGCTCAAC
TCGCGGCTCG ACGTCGCGTT GCGCGAGCAG TTCGATGAAG CGCGTGCATT CGGCGAACAC
CAGTCCGCTA AGGCGCAGCC ATTCCAGCAC AGTGCAAACG CGAACGACGC AGGCAGGCGT
CTGCGCGTCG GCTTCGTGTC CGGCGATCTC AACTCGCATC CCGTCGGCTT TTTCCTCGAA
AGCGTGCTCG GCCATCTGGA CCGCACGCGC ATCGAACTGG TCGCCTACGC GACGCGCAAA
CGCGAAGACG CGGTGTCGCA GCGTCTGATG CCGCAGTTCA GCGCGTGGCA CGACATCTCG
CGCCTCGACG ACGCAGCCTG CGCGCGCCGC ATCCGCGACG ACGGGATCGA TATTCTCGTG
GACCTGTCGG GTCACACGAA TCACAACCGC TTGTCCGTGT TTGCGTGGAA GCCCGCACCC
GTGCAGGCGA CGTGGCTCGG CTACTTCGCG ACGACGGGTC TTGCCGCGAT CGATTACGTG
ATTGCGGACC GCCACGTGCT GCCGTTGGAC GAAGCGTCGC AATTCGTCGA AGCGCCGTGG
CACTTGCCCG ACAGCTATCT GTGCTTTACC CCGCCGCCGT TCGATATCGA GGTCGGCCCA
TTGCCCGCGA GTGCGAACGG CGCGATCACG TTCGGCTGCT TCAACCATCT GGTAAAGCTC
AACGAGGCCG TCGTCGCGCT GTGGGCGCGC GTGCTCGACG CCATGCCGGG TTCGCGTCTG
CTGCTGAAAA CGCGGCAACT CGACGACCCG GCCGTGCAGC ACGCCACCCT CGCGCGCTTC
GCCGCGCACG GCATCGACGG CGCGCGTCTG ATGCTCGAAG GCCAGTCGCC GCGTGCAGAA
CTGCTCGCGG CGTACAACCG CGTCGACATC GCGCTCGACC CATTCCCATA CGCGGGCGGC
ACGACGAGCA TCGAAGCGTT GTGGATGGGC GTGCCCGTGC TGACGCGGCG TGGCGAACGC
TTTCTGTCGC ATGTCGGCGA AAGCATCGTG GATACGGTGG GCCTGCCAGA CTGGATCGCG
AGCGACGACG CGGACTATAT CGCCAAGGCC GTTCGCGTCG GCGTGCAGCG CGACGAACTG
GCGACGCTCA GACGCACATT GCGCCAACGC CTGCTGGCTT CGCCACTGTG CGACGCGCCG
CGTTTCGCGC GCCATCTCGA GGACGCATTT CACGGCATGT GGGCGCGCCG CGTCGCATGC
CATCAAGCAA ACGACGGGCA TCCCGCCCAA CCGCATCGAC ATTCATCAGG GGACGCCCGC
CACGCCGCGG AGCGCAATTT CGCATGA
|
|---|
| Protein sequence | MQAPPDHDSR TNGDVPMDAT AHAPAPLPDF DASAMLQAAF AHHQAGRTGE AAECYKQILQ
HDGMHPDAMH FLGVLACDVG NLPAGIDLIE KSIQLHPNAI YLNNLGNMRG RARDLQGAIA
AYRAALSLAP DYAQAHSNLG HTLREAGDPA AAIDSCTVAT RLKPDLPQAW THLGNALLEL
GSDEGALDSY MKALALQPND ANAHNNVGNI LEKYGRAAGA AESYRRALAL EPHRASLHNN
LGNVLRDQGQ LDQATACYRQ AVALDPGFAQ AHSNLLLLLN SRLDVALREQ FDEARAFGEH
QSAKAQPFQH SANANDAGRR LRVGFVSGDL NSHPVGFFLE SVLGHLDRTR IELVAYATRK
REDAVSQRLM PQFSAWHDIS RLDDAACARR IRDDGIDILV DLSGHTNHNR LSVFAWKPAP
VQATWLGYFA TTGLAAIDYV IADRHVLPLD EASQFVEAPW HLPDSYLCFT PPPFDIEVGP
LPASANGAIT FGCFNHLVKL NEAVVALWAR VLDAMPGSRL LLKTRQLDDP AVQHATLARF
AAHGIDGARL MLEGQSPRAE LLAAYNRVDI ALDPFPYAGG TTSIEALWMG VPVLTRRGER
FLSHVGESIV DTVGLPDWIA SDDADYIAKA VRVGVQRDEL ATLRRTLRQR LLASPLCDAP
RFARHLEDAF HGMWARRVAC HQANDGHPAQ PHRHSSGDAR HAAERNFA
|
|---|
| |