Gene Bphy_2900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_2900 
Symbol 
ID6244383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010622 
Strand
Start bp3254432 
End bp3256405 
Gene Length1974 bp 
Protein Length657 aa 
Translation table11 
GC content65% 
IMG OID642594705 
Productlytic transglycosylase catalytic 
Protein accessionYP_001859118 
Protein GI186477648 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.152678 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAAC GCCTTTTCCG AGTATATCGC GCGGCCAGTC TGGCGCTCGC CGCGGCGGCA 
CTCGTCGCGT GCAGCACGGC CTCCGCGGTC AAGCCCATCC AGCTCTCCCA ACTCACCAAC
GACGACCAGA TTTTCGTGCA GTTGCGCGAG GCAGCGCGCA ACAACGACGC AGGCCGCGCT
GCGCAACTCG CGGCGATGAT TCCGGACTAT CCGGCGCCCG CGTACCTCGA ATACTTCCAG
CTGAAGCCGC AACTGTTCGA CGGCTCGGGC CATCCGCGCA TCGACGCAGC CGACGCACCC
GTGCTGTCGT TCTTGCAACG CTACGACGGC CAGGCCATCG CCGACCGCAT GCGCAACGAC
TACCTGGTCG TGCTCGGCGC ACGACACGAC TGGCGCAACT TCGACCAGCA ATACGCGCGC
TTCGTGCTGA ACGACGACAC CCAGGTGAAG TGCTACGCGC TCGAATCGCG CGCGGCGAAA
GGCGAGAACG TCGTCGACGC AGCGCGCGCG CTGCTCGTCG AGCCGCGCTA TTACGGCGAC
GGCTGCGTCG ATCTCATCAC CTCGCTGGCG ATCAGCCAGC AGTTCACGAC CGACGACGTA
TGGCAGCAGA TCCGTCTCGC GTACGAACAG AACCAGACCA GCACGGGCGC GAAGCTCGTC
GACGCACTGG GCAACAACCG TCCCGATCCG ACGCTGTTCG ATCAGGCCGC AACTACGCCG
CCGTTGCTGC TCGCGCGCGG TGTCGGCGCC GATCCGCAAT CGCATCAGCT CGCGCTGCTC
GCGATCACGC GCATGGCCCG CAACGATCCC GCCATGGCAG CCGCCACCTT CGGCTCGGTC
GCACCTTCGC TGACGTCGCC CGAACGCGGG ATCGGCTGGG GCACGATTGC GTATCAGGCC
GCTGCGAAGC AGATGCCGGG CGCCGTCGAC TGGTATCGCC TGTCGGCGAA TGCACCGCTG
TCCACGCCCG CTTACGAATG GCGCACGCGC GTCGCGCTTC TTGCCGGCGA CTGGACGATG
GTGCGCTGGT CGATCGAGCA AATGCCGCCT TCATTGCGCA GCCAGCCCGC GTGGGCCTAC
TGGCACGCGC GCGCTATCAA GGCGGCGGGC GACGTGACGA CGGCCAATCA GGAATTCGAG
TCGATCGCGC AGCAGTACAA CTTCTACGGC CAGCTTGCCG CCGAAGAACT CGGCCAGAAG
ATCGTCGTGC CGCCGAAAAC CACCGTCACC GATGCCGAAG TGCAACAGGC GGGCGACACG
CCCGGCTTCG CGCTTGCCCA GAAGTTCTAT CAGCTGAATC TGCGGCTCGA AGGCAACCGC
GAATGGAACT GGCCGTTGCG CAGCATGACC GACCGTCAAC TGATCGCCGC CGCCGAATAT
GCGCGCCGTA TCGAGCTCTA TGACCGCGCA GTGAATACGG CCGATCGCAC GAAGACCGAG
CACGACTTCT CGCTGCGCTT CCTGTCGCCG TTCCGCGATA TCGTCGAGCG CGACGCGCAG
TCGAACGGGC TCGATGTCGA ATGGGCGTAT GGTCTGATCC GTCAGGAATC GCGCTTCATC
ATGAACGCGC GCTCGGAGGT CGGCGCGAGC GGCCTGATGC AGCTGATGCC GGGCACGGCG
CAACTGGTCG CGAAGAAGAT CGGCCTCGGC ACCATCTCGC GTGCCCAGAT GAACGACATC
AACACCAATA TCCTGCTCGG CACGAACTAT CTGTCGATGA TCTACAATGA GTTCGACGGC
TCCGCCGTGC TCGCCACGGC GGGCTACAAC GCAGGTCCGG GCCGTCCGCG CAACTGGCGC
GCGTCGTTGC CGCGCGGTGT CGAAGGCGCG ATTTTCGCGG AAGCGATTCC GTTCCAGGAA
ACGCGCGACT ACGTGAAGAA CGTGCTGTCC AACACCGTCT ACTATGCGGC GTTGTTCGAA
GGCCGTCCGC AATCGCTGAA GGCGCGTCTG GGTTATATCC AGCCGTTGCA GTAA
 
Protein sequence
MSKRLFRVYR AASLALAAAA LVACSTASAV KPIQLSQLTN DDQIFVQLRE AARNNDAGRA 
AQLAAMIPDY PAPAYLEYFQ LKPQLFDGSG HPRIDAADAP VLSFLQRYDG QAIADRMRND
YLVVLGARHD WRNFDQQYAR FVLNDDTQVK CYALESRAAK GENVVDAARA LLVEPRYYGD
GCVDLITSLA ISQQFTTDDV WQQIRLAYEQ NQTSTGAKLV DALGNNRPDP TLFDQAATTP
PLLLARGVGA DPQSHQLALL AITRMARNDP AMAAATFGSV APSLTSPERG IGWGTIAYQA
AAKQMPGAVD WYRLSANAPL STPAYEWRTR VALLAGDWTM VRWSIEQMPP SLRSQPAWAY
WHARAIKAAG DVTTANQEFE SIAQQYNFYG QLAAEELGQK IVVPPKTTVT DAEVQQAGDT
PGFALAQKFY QLNLRLEGNR EWNWPLRSMT DRQLIAAAEY ARRIELYDRA VNTADRTKTE
HDFSLRFLSP FRDIVERDAQ SNGLDVEWAY GLIRQESRFI MNARSEVGAS GLMQLMPGTA
QLVAKKIGLG TISRAQMNDI NTNILLGTNY LSMIYNEFDG SAVLATAGYN AGPGRPRNWR
ASLPRGVEGA IFAEAIPFQE TRDYVKNVLS NTVYYAALFE GRPQSLKARL GYIQPLQ