Gene Bphy_2527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_2527 
SymbolsecD 
ID6244010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010622 
Strand
Start bp2847790 
End bp2849835 
Gene Length2046 bp 
Protein Length681 aa 
Translation table11 
GC content65% 
IMG OID642594316 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001858745 
Protein GI186477275 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGTT ACCCCCTCTG GAAGTATGCC GTGATGCTGG TGGCGCTCGT CATCGGCCTC 
GTGTACACGC TGCCCAATTT CTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCAACGGTGA AGCTCGATTC GACCACGCTG TCGCAGGTCG AAGCGGCGCT CGCATCCAGC
CAGATCAAGC CCGACGACGT CACGTTCGAC AACTCGACGC AAAACGCGAA CATCCGGGTG
CGTCTGAAAG ACACCGACAC GCAACTGCGC GTGAAGGATC TGCTGCAAAA GGCGCTCAAT
AGCGACCCGA CCGATCCGCA GTTCATCGTG GCGCTGAACC TGCAAAGCGC GTCGCCGCAC
TGGCTGACCG CGCTGCACGC GCTGCCCATG TATCTCGGTC TCGACCTGCG CGGCGGCGTG
CACTTCCTGC TGCAAGTCGA TATGGCAGGC GCGCTCAACA AGAAACTGGA TTCCGACGCA
TCGGATGCGC GCACGCTGCT GCGCGACAAG GGCATCCGCG ACGGTGGCGT GAACCGCGTC
GGTCAATCGG TCGTCATCAA TTTCGCGGAT CAGGACGTCG CGGAAACAGC GCGCAAGCAG
CTGACCGCGG GCGTGTCCGA ACTGCAGTGG GCGACGCAGC CGAATCCGAG CGGCGGCTTC
CAGGCGGTGG GCACGTTCAC CCCTGCCGTG CAAAAGACGG TGGAGGACGC GGCGCTCAAG
CAGAACATCA CGACGCTGCA CAACCGCGTC AACGAACTCG GGGTGGCCGA ACCCGTCATC
CAGCAGCAAG GCTCCGACCG CATCGTCGTG GAACTGCCGG GCGTGCAGGA CACGGCGAAG
GCGAAGGACA TCATCGGCCG TACGGCGACG CTCGAAGCAC GCCTCGCCGA TCCGAACGGA
CTGCATCCGA ATCCGTCCGA CCCGGTCCCG GCGGGCGACG AACTCTTCAC GCAAGGCAAC
GCCGTGCCCG TGCTGCTGCG CAAGTCGGTG ATCTTCACTG GCGACCGCAT CATCGACGCA
TCGGCGGGCT TCGACGAACA CCAGCGTCCG TCCGTCAACA TCCGTCTCGA CTCGGCAGGC
GGCCGTGCGG TACGCAGCGT GTCGCGCGAC AACATCGGCA AGCCGATGGC GATGGTGCTG
TTCGAAAAGG GCAAGGGCGA AGTGCTGACG GTCGCGACGA TCCAGTCGGA ACTAGGCGAC
CGCTTCCAGA TCACGGGCCA GCCGACGCCG CAAGCGGCAA CCGATCTCGC ACTGCTGCTG
CGCGCCGGTT CGCTCGCGGC ACCGATGGAC ATCATCGAAG AGCGCACGAT CGGCCCGAGC
CTCGGCGCGG ACAATATCAA GAAGGGCTTC GATTCCGTCG TGTACGGCTT CATCGCGATC
GCGGCCTTCA TGATCGCGTA CTACATGCTG TTCGGCCTGA TCTCGATGAT CGCGCTGTCG
GTGAACCTGC TGCTGCTCAT CGCCGTCCTG TCGATGCTGC AGGCCACGCT CACCTTGCCG
GGCATCGCCG CTATCGCGCT TGCGCTCGGT ATGGCCATCG ACGCCAACGT GCTGATCAAC
GAGCGCGTTC GTGAAGAACT GCGCAACGGC GCGCCGCCGC AACTGGCCAT CCAGAACGGC
TACGCGCATG CATGGGCGAC GATTCTCGAC TCGAACGTGA CTACCCTGAT CGCCGGTCTC
GCGCTGCTCG CATTCGGCTC CGGCCCGGTG CGCGGCTTCG CGGTCGTGCA CTGCATCGGC
ATTCTGACGT CGATGTTCTC GGCGGTGTTC TTCTCGCGCG GTCTGGTGAA CCTGTGGTAC
GGCGGCAAGA AAAAGCTGAA GTCGCTGGCT GTCGGCCAGG TGTGGAAGCC CGCGGCAGTG
GAAGGCGCAA CGGCTTACCT CGACAACGCC GACGAGCAGA CCGACACGGC TGCGCAGATC
GCCGCAACCA AGGCGCCGAA GCAGAGGACC AAGGCTTCGG CGGGCGCGCA AGCGCGTGCG
GGCAAGCCGA CGCTGCGCAA CCGCAACGCG CCGGGTGGCA CGAACAAGCC GGGTTCGACC
CGCTGA
 
Protein sequence
MNRYPLWKYA VMLVALVIGL VYTLPNFFGE APAVQVSSGK ATVKLDSTTL SQVEAALASS 
QIKPDDVTFD NSTQNANIRV RLKDTDTQLR VKDLLQKALN SDPTDPQFIV ALNLQSASPH
WLTALHALPM YLGLDLRGGV HFLLQVDMAG ALNKKLDSDA SDARTLLRDK GIRDGGVNRV
GQSVVINFAD QDVAETARKQ LTAGVSELQW ATQPNPSGGF QAVGTFTPAV QKTVEDAALK
QNITTLHNRV NELGVAEPVI QQQGSDRIVV ELPGVQDTAK AKDIIGRTAT LEARLADPNG
LHPNPSDPVP AGDELFTQGN AVPVLLRKSV IFTGDRIIDA SAGFDEHQRP SVNIRLDSAG
GRAVRSVSRD NIGKPMAMVL FEKGKGEVLT VATIQSELGD RFQITGQPTP QAATDLALLL
RAGSLAAPMD IIEERTIGPS LGADNIKKGF DSVVYGFIAI AAFMIAYYML FGLISMIALS
VNLLLLIAVL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG APPQLAIQNG
YAHAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCIG ILTSMFSAVF FSRGLVNLWY
GGKKKLKSLA VGQVWKPAAV EGATAYLDNA DEQTDTAAQI AATKAPKQRT KASAGAQARA
GKPTLRNRNA PGGTNKPGST R