Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_2527 |
Symbol | secD |
ID | 6244010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | + |
Start bp | 2847790 |
End bp | 2849835 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642594316 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001858745 |
Protein GI | 186477275 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ACCCCCTCTG GAAGTATGCC GTGATGCTGG TGGCGCTCGT CATCGGCCTC GTGTACACGC TGCCCAATTT CTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG GCAACGGTGA AGCTCGATTC GACCACGCTG TCGCAGGTCG AAGCGGCGCT CGCATCCAGC CAGATCAAGC CCGACGACGT CACGTTCGAC AACTCGACGC AAAACGCGAA CATCCGGGTG CGTCTGAAAG ACACCGACAC GCAACTGCGC GTGAAGGATC TGCTGCAAAA GGCGCTCAAT AGCGACCCGA CCGATCCGCA GTTCATCGTG GCGCTGAACC TGCAAAGCGC GTCGCCGCAC TGGCTGACCG CGCTGCACGC GCTGCCCATG TATCTCGGTC TCGACCTGCG CGGCGGCGTG CACTTCCTGC TGCAAGTCGA TATGGCAGGC GCGCTCAACA AGAAACTGGA TTCCGACGCA TCGGATGCGC GCACGCTGCT GCGCGACAAG GGCATCCGCG ACGGTGGCGT GAACCGCGTC GGTCAATCGG TCGTCATCAA TTTCGCGGAT CAGGACGTCG CGGAAACAGC GCGCAAGCAG CTGACCGCGG GCGTGTCCGA ACTGCAGTGG GCGACGCAGC CGAATCCGAG CGGCGGCTTC CAGGCGGTGG GCACGTTCAC CCCTGCCGTG CAAAAGACGG TGGAGGACGC GGCGCTCAAG CAGAACATCA CGACGCTGCA CAACCGCGTC AACGAACTCG GGGTGGCCGA ACCCGTCATC CAGCAGCAAG GCTCCGACCG CATCGTCGTG GAACTGCCGG GCGTGCAGGA CACGGCGAAG GCGAAGGACA TCATCGGCCG TACGGCGACG CTCGAAGCAC GCCTCGCCGA TCCGAACGGA CTGCATCCGA ATCCGTCCGA CCCGGTCCCG GCGGGCGACG AACTCTTCAC GCAAGGCAAC GCCGTGCCCG TGCTGCTGCG CAAGTCGGTG ATCTTCACTG GCGACCGCAT CATCGACGCA TCGGCGGGCT TCGACGAACA CCAGCGTCCG TCCGTCAACA TCCGTCTCGA CTCGGCAGGC GGCCGTGCGG TACGCAGCGT GTCGCGCGAC AACATCGGCA AGCCGATGGC GATGGTGCTG TTCGAAAAGG GCAAGGGCGA AGTGCTGACG GTCGCGACGA TCCAGTCGGA ACTAGGCGAC CGCTTCCAGA TCACGGGCCA GCCGACGCCG CAAGCGGCAA CCGATCTCGC ACTGCTGCTG CGCGCCGGTT CGCTCGCGGC ACCGATGGAC ATCATCGAAG AGCGCACGAT CGGCCCGAGC CTCGGCGCGG ACAATATCAA GAAGGGCTTC GATTCCGTCG TGTACGGCTT CATCGCGATC GCGGCCTTCA TGATCGCGTA CTACATGCTG TTCGGCCTGA TCTCGATGAT CGCGCTGTCG GTGAACCTGC TGCTGCTCAT CGCCGTCCTG TCGATGCTGC AGGCCACGCT CACCTTGCCG GGCATCGCCG CTATCGCGCT TGCGCTCGGT ATGGCCATCG ACGCCAACGT GCTGATCAAC GAGCGCGTTC GTGAAGAACT GCGCAACGGC GCGCCGCCGC AACTGGCCAT CCAGAACGGC TACGCGCATG CATGGGCGAC GATTCTCGAC TCGAACGTGA CTACCCTGAT CGCCGGTCTC GCGCTGCTCG CATTCGGCTC CGGCCCGGTG CGCGGCTTCG CGGTCGTGCA CTGCATCGGC ATTCTGACGT CGATGTTCTC GGCGGTGTTC TTCTCGCGCG GTCTGGTGAA CCTGTGGTAC GGCGGCAAGA AAAAGCTGAA GTCGCTGGCT GTCGGCCAGG TGTGGAAGCC CGCGGCAGTG GAAGGCGCAA CGGCTTACCT CGACAACGCC GACGAGCAGA CCGACACGGC TGCGCAGATC GCCGCAACCA AGGCGCCGAA GCAGAGGACC AAGGCTTCGG CGGGCGCGCA AGCGCGTGCG GGCAAGCCGA CGCTGCGCAA CCGCAACGCG CCGGGTGGCA CGAACAAGCC GGGTTCGACC CGCTGA
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Protein sequence | MNRYPLWKYA VMLVALVIGL VYTLPNFFGE APAVQVSSGK ATVKLDSTTL SQVEAALASS QIKPDDVTFD NSTQNANIRV RLKDTDTQLR VKDLLQKALN SDPTDPQFIV ALNLQSASPH WLTALHALPM YLGLDLRGGV HFLLQVDMAG ALNKKLDSDA SDARTLLRDK GIRDGGVNRV GQSVVINFAD QDVAETARKQ LTAGVSELQW ATQPNPSGGF QAVGTFTPAV QKTVEDAALK QNITTLHNRV NELGVAEPVI QQQGSDRIVV ELPGVQDTAK AKDIIGRTAT LEARLADPNG LHPNPSDPVP AGDELFTQGN AVPVLLRKSV IFTGDRIIDA SAGFDEHQRP SVNIRLDSAG GRAVRSVSRD NIGKPMAMVL FEKGKGEVLT VATIQSELGD RFQITGQPTP QAATDLALLL RAGSLAAPMD IIEERTIGPS LGADNIKKGF DSVVYGFIAI AAFMIAYYML FGLISMIALS VNLLLLIAVL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG APPQLAIQNG YAHAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCIG ILTSMFSAVF FSRGLVNLWY GGKKKLKSLA VGQVWKPAAV EGATAYLDNA DEQTDTAAQI AATKAPKQRT KASAGAQARA GKPTLRNRNA PGGTNKPGST R
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