| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1936 |
|---|
| Symbol | |
|---|
| ID | 6243425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 2179543 |
|---|
| End bp | 2181561 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642593724 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_001858161 |
|---|
| Protein GI | 186476691 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCG CGCATCGGCT CATCCGTTCG TATTCGTTTT ACACGCTTGG CTTTTTCGCG
TTCATCTATC TGCTCTGGCG CATCGAGGCG GCGAGCGGGC CGGGCATGTG GATCGGCTAC
GTGTTCCTGT TCGTGCCGAT CGCCGTGTAT GCGGTGATCG GGCTGCTGTC GCGCACCTCC
GATCTCGTCG AATACTATGT GGCGGGGCGG CGCGTGCCGT CCGCGTTCAA TGGCATGGCG
ACCGCGGCGG ACTGGCTGTC GGCGGCGTCG TTCATCGGGC TCGCGGGCAG TCTGTATGCG
ACGGGCTACG ACGGTCTCGC CTACACGATG GGCTGGACGG GCGGCTACTG CCTCGTCGCG
TTTCTGCTCG CGCCCTATGT GCGCAAGCTC GCGCGCTACA CGATTCCCGA CTTCCTCGGC
ACGCGCTTTT CGAGCAATGC TGTGCGCGGC CTCGCCGCGC TGTCTGCGAT CCTGTGTTCG
TTCGTCTATC TCGTTGCGCA GATCCAGGGG GTCGGTCTGA TCGCGACGCG CTTCATCGGC
GTCGACTTTG CGATCGGCAT CTTCTGCGGG CTCGCGGGCA TTCTCGTGTG CTCGTTCCTT
GGCGGCATGC GCGCGGTGAC GTGGACGCAG GTCGCGCAGT ACATCATCCT GATCGTGGCG
TTTCTGATTC CTGTGTCGAT GATTGCGCAC AAGGACGGCC TCGGCTGGGT CCCGCAACTG
AGCTATGGGC GGTTGATGGA ACGCATCGAA CCGCTCGAGC GCAGCGTGCG CGATGCGCCG
TCGGAGCAGG CGGTGCGCGA CGATTATCGG ATGCGCGCCG CGTTGATGCA GACACAGATC
GACAGCCTGC CGCAGTCGTT CATCGACGAG AAGAGCCGCC TGACCGAGCA GCTGGACGAT
TTGCGGCGGC ATAACGGACC GCTGCGCGAG ATCGCCGATC TCCAGCGCCG CATCGCGCGC
TTTCCGCGCG ATGCGGCGAC GGCGCAGATC GTGTGGGCGC AGCAGCGCGA CGAGATGATG
CAGCGCGCGG CGCAGCCTGT GCCGATGCAC GAGCCGTTTC CCGCCGCGAA CGAAGACGAG
CGCCAGTTGC ACCAGCGCAA CTTTCTTTCG TTGCTGCTGT GTTTGTCGCT CGGGACGGCG
AGCCTGCCGC ATATCCTCAC GCGCTATAAC ACGACGACGT CGGTGGCGTC GGCGCGGCGC
TCGGTCGGCT GGACGCTGTT CTTCGTCGCG CTGTTCTATC TGACGGTGCC CGTGCTGGCG
GTGCTGATCA AGTACGAGGT TCTGTCGAAT CTGGTTGGGC ATCGCTTTTC CGAACTTCCG
CAATGGGTGA TGCAATGGCG GCGCGTGGAG CCGTACCTGA TCGGTATCGC CGATGTGAAC
GGCGATGGCA TCGTGCGCTG GAGCGAGATC CAGATGCAGC CTGACATGGT CGTGTTGGCC
GCGCCTGAGA TAGCGGGGCT GCCGTATGTG ATGTCTGGGC TGATTGCGGC GGGCGCGCTG
GCGGCGGCGC TATCGACAGC CGATGGGCTG CTGCTCACCA TCGCCAACGC GCTCTCGCAC
GATGTGTACT ACCACATGGT CGACCCCGAG GCGTCGAGTC AGAAGCGGGT GACGGTCTCG
AAGATTCTGC TGCTCGGGGT CGCGCTGCTG GCGTCATACG TGGCGTCGCT GAATGCGGGG
AACATCCTGT TTCTGGTGGG CGCGGCGTTT TCGCTGGCGG CGTCGAGCCT CTTTCCCGTG
CTCGTGCTCG GTGTGTTCTG GAAGCGCACG ACGCGCCTTG GCGCGGTGGC GGGGATGGTG
GCAGGACTGC TTGTGTGCAT CTGGTACATC GTGTCGACGT ATCCGTTCTT CACGCAGTTG
ACGGGCTTCG TCGGGCCGCG CTGGTTCGGC ATCGAGCCGA TCAGTTCGGG TGTGTTCGGC
GTGCCGGCGG GATTTCTGGT AGCGGTGCTG GCGAGTCTCG TCGACCGGAA ACCGGATGCG
TATACGCGGG CGCTCGTGGA CTATATCCGG CATCCGTGA
|
|---|
| Protein sequence | MKLAHRLIRS YSFYTLGFFA FIYLLWRIEA ASGPGMWIGY VFLFVPIAVY AVIGLLSRTS
DLVEYYVAGR RVPSAFNGMA TAADWLSAAS FIGLAGSLYA TGYDGLAYTM GWTGGYCLVA
FLLAPYVRKL ARYTIPDFLG TRFSSNAVRG LAALSAILCS FVYLVAQIQG VGLIATRFIG
VDFAIGIFCG LAGILVCSFL GGMRAVTWTQ VAQYIILIVA FLIPVSMIAH KDGLGWVPQL
SYGRLMERIE PLERSVRDAP SEQAVRDDYR MRAALMQTQI DSLPQSFIDE KSRLTEQLDD
LRRHNGPLRE IADLQRRIAR FPRDAATAQI VWAQQRDEMM QRAAQPVPMH EPFPAANEDE
RQLHQRNFLS LLLCLSLGTA SLPHILTRYN TTTSVASARR SVGWTLFFVA LFYLTVPVLA
VLIKYEVLSN LVGHRFSELP QWVMQWRRVE PYLIGIADVN GDGIVRWSEI QMQPDMVVLA
APEIAGLPYV MSGLIAAGAL AAALSTADGL LLTIANALSH DVYYHMVDPE ASSQKRVTVS
KILLLGVALL ASYVASLNAG NILFLVGAAF SLAASSLFPV LVLGVFWKRT TRLGAVAGMV
AGLLVCIWYI VSTYPFFTQL TGFVGPRWFG IEPISSGVFG VPAGFLVAVL ASLVDRKPDA
YTRALVDYIR HP
|
|---|
| |