| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1754 |
|---|
| Symbol | |
|---|
| ID | 6243245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 2003252 |
|---|
| End bp | 2005891 |
|---|
| Gene Length | 2640 bp |
|---|
| Protein Length | 879 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642593544 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001857982 |
|---|
| Protein GI | 186476512 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAT GCCCTGCGCG GCGTGAATCG CGGGCTGCGC CGTCATCCGG CGGGCTGCTG
GCGATTGACG CCGGTTTTCG TATTGTTTTC GGATTCTTTT CGCAAGCCCG ATCATTGCAC
CGGCTGCGTG CGGGCCTGTT CGCGTATGCG TTTTGCACGT CGCTCTGGCT ATCGCTCGCA
CTCGCCAGCG CCGGCCTTGT CCTGTCCGGC CCTGCACATG CGGCCGGCGC CGCCAGCGGC
ACACCCGTCA TTCCGGCGCT GCAAAGCCTG ATCAATAGCG CGACGGTGTC GCCGGCTGCG
CCCGCGTCGG GCGCATCGGC AGCCGATGCG GCGTCGGCGC CGTCACCCGC CAGCCAGGCG
GAACTGACGA GATCGCTCGA CAGCGTGATC AGCACGCTCG ACAACGACCA CCAGCGCACC
GCGCTCGTCG CGCAGCTGAA GAAGCTGCGC GACGCGTCGA AGACGGTCGG ACCGCCCGTG
ACCGCGCAGC CGAATCCCGG TTCGGGGCTG CTGGGCGCGA TCGCGGCGGG CATCGCGTCG
TTCGAATCGG ACGTGCATCA GGGCCGCTCT CCCCTCAATT ACTGGTCCGG CCGCTTCAAC
GCGGCGGGCA ACGAGATCTA CACGATTGTC ACGAGCCAGG GGCGCGAGCA CTTCGGCCAG
GTGCTGCTGA CCATGTTCGC CGTGCTCGCC GGATGGGGCG CGTGCGCGGC GGCGCTCATC
TATGTGCAGC GCAGGATTCA CGCGCGCTTC GGCATCGTCG TACGGCTGGA TGCGAATCCC
ACCACGCGCG ATCTGCTGAT CTTCGCGCTG CGCCGCGTGG GTCCGTGGAT CGTCGCGTTC
GTCGCCGCGT TGATGTTCGT GCGTGCGATG CCCGATTCGC TCGGCCGCAC GATCGCGATG
GTGATCGCGT ACGCGATCGT CGCGGGTGCG GTGTTCTCGG CGATCTGCCT GATCATGTTC
TCGCTGTTCG GTTCGGGGCA TCGGCGCGCG GCCGTGCGCG TGCTGATCGA GCAGGGGCGG
CGGCTGCTGT TCGCGATCGG CATTTGCAGC GCGCTCGGCG ATGCCGCCGT CAACTACGAT
GTCGCGCATG AACTCGGCAC GAATCTCGCG GCGCTCGTAT CGACGGTTTC GAACATGACG
GCGGCGGCGC TGACCGCTTA TTTTGCGCTG GCGTTCCGGC GTCCCGTCGC GCATCTGATC
CGCAATCGCG CATACGAGCA GCGTCACGAT CACAAGGCCG CGACCGACGC GTTCGACGTG
CTCGCCTCGC TATGGCACGT GCCGATGCTG GTGCTCGCGA CAGCCTCCGT GATCGCGACG
ATCGGCGGTA TCGGCAGCGG CGAGAATGTG TTGCAGATTT CCGTCGTGAC GGCGCTGCTG
CTGGTGCTGG CGTTCTTTCT GTCGGCCGTC GTGCTGCGCG TGACGCGTCC GCGCAGCGCG
CGACGCCGAC GCCGCTCGCC CTATCTGACG CGGCTGCTGC GCTTTGTCGG CACGCTGATT
ACGCTGTTCG TCTGGCTCGC GTATTTCGAG TTCGCCGCGC GGCTGTGGGA TGTGTCGCTC
GCGCAGATCA TCGAGGAAAG CGTGACGGCG CGCGGCATCG CGCACGCACT CACTGCAATT
ATCATCACAG TGTTTTTGTC GTGGCTCGTG TGGATCCTGA TCGATACGGC GATTCAGGAA
GCCGTCAATC CAAGCAGCCC GCGCAACAAG TCGAAGAACC CGAGCATGCG CGCACGCACG
ATGCTGCCGC TCGTGCGCAA CGTGCTGTTC GTGACCATCC TGACGATCGC GGGCATCGTC
ACGGCGGCGA ACCTCGGCAT CAACGTGACG CCGCTGCTGG CGGGCGCCGG CGTGATCGGT
CTCGCGATTG GCTTCGGCGC GCAGTCGCTG GTGAGCGATC TGATTACGGG CCTTTTCATT
ATCATCGAGG ACACGATTTC GGTCGGCGAC TGGATCGATA TCGACGGCGG CCATGCGGGC
ACGGTTGAAT ATCTGTCGAT CCGCACGGTG CGTCTGCGCG ACGGCCAGGG CGCGATTCAC
GCCATTCCTT TTTCGCAGAT CAAGATCGTG AAGAACCTGT CGCGCGATTT TGCGTATGCG
GTGTTCGAAG TGCGTGTGCC GTTCTCCGCC GATGTCGATG AAGTGACGCA GCTGATTCGC
GCTGTCGGCG CGGACCTGAT GGCGGACTTC CGTTACCGGC GCGAGATGCT CGGACCTGTC
GAAGTCTGGG GGCTCGATCG CTTCGATCCC AACTGGATGG TCGTCAAAGG CCAGATCAAG
ACGCGGCCGC TGCAGCAATG GAGCGTGGCA CGTGCGTTCA ACCTGCGTTT GAAGCGCAAG
ATGGACGAAG CGGGCATCGA GATCCCTGTG CCGCAGATGC GCGTGCATAC GTCACGAGGC
GACGAAGTCG GCGAAGCGCT GATGGAAGAA GATGTCGCAC AGCACGACGT CGCGCAGCAT
GGGGCGCACG CGCGCGAAGC CGCGACGGGC ACGACGACAC CGTTCAGGCC GAAGACGGGT
GCTCCCGTGC CGCCGGCGCG CGACGTATCG CACGAGCCGC GTCCAGCGCC GCCGTCGACG
GGACAGACGG CCTCCGTGCC GCCGCAGATT CCGACGGCGG GCGACGGTGG CAAGACGTGA
|
|---|
| Protein sequence | MKSCPARRES RAAPSSGGLL AIDAGFRIVF GFFSQARSLH RLRAGLFAYA FCTSLWLSLA
LASAGLVLSG PAHAAGAASG TPVIPALQSL INSATVSPAA PASGASAADA ASAPSPASQA
ELTRSLDSVI STLDNDHQRT ALVAQLKKLR DASKTVGPPV TAQPNPGSGL LGAIAAGIAS
FESDVHQGRS PLNYWSGRFN AAGNEIYTIV TSQGREHFGQ VLLTMFAVLA GWGACAAALI
YVQRRIHARF GIVVRLDANP TTRDLLIFAL RRVGPWIVAF VAALMFVRAM PDSLGRTIAM
VIAYAIVAGA VFSAICLIMF SLFGSGHRRA AVRVLIEQGR RLLFAIGICS ALGDAAVNYD
VAHELGTNLA ALVSTVSNMT AAALTAYFAL AFRRPVAHLI RNRAYEQRHD HKAATDAFDV
LASLWHVPML VLATASVIAT IGGIGSGENV LQISVVTALL LVLAFFLSAV VLRVTRPRSA
RRRRRSPYLT RLLRFVGTLI TLFVWLAYFE FAARLWDVSL AQIIEESVTA RGIAHALTAI
IITVFLSWLV WILIDTAIQE AVNPSSPRNK SKNPSMRART MLPLVRNVLF VTILTIAGIV
TAANLGINVT PLLAGAGVIG LAIGFGAQSL VSDLITGLFI IIEDTISVGD WIDIDGGHAG
TVEYLSIRTV RLRDGQGAIH AIPFSQIKIV KNLSRDFAYA VFEVRVPFSA DVDEVTQLIR
AVGADLMADF RYRREMLGPV EVWGLDRFDP NWMVVKGQIK TRPLQQWSVA RAFNLRLKRK
MDEAGIEIPV PQMRVHTSRG DEVGEALMEE DVAQHDVAQH GAHAREAATG TTTPFRPKTG
APVPPARDVS HEPRPAPPST GQTASVPPQI PTAGDGGKT
|
|---|
| |