Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_1406 |
Symbol | |
ID | 6242897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | + |
Start bp | 1582366 |
End bp | 1584708 |
Gene Length | 2343 bp |
Protein Length | 780 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642593189 |
Product | RNA-binding S1 domain-containing protein |
Protein accession | YP_001857634 |
Protein GI | 186476164 |
COG category | [K] Transcription |
COG ID | [COG2183] Transcriptional accessory protein |
TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.252881 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0000000874326 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACGGACA CCGTAGCACT CAAGATCGTA CAGCGCATCG CCACCGAACT CACCGTCCAA CCGCGCCAGG TCGCGGCCGC GGTGGCCCTT CTCGACGAAG GCGCGACTGT TCCGTTTATC GCCCGGTACC GGAAGGAAGT CACCGGCAAT CTCGACGACA CGCAACTGCG CACGCTCGAA GAACGCCTGC TCTATCTGCG CGAACTCGAA AACCGTCGCG CCGCGATCAT CGCGAGCATC GATGAGCAGG GCAAGCTCAC GGACGAGTTG CGCACCGCGA TCGAAGCCGC CGACAGCAAG CAGGTGCTGG AAGATCTCTA TCTGCCGTAC AAGCCGAAGC GCCGCACGCG CGCGCAGATC GCCCGCGAAG CCGGTCTGCA GCCGCTCGCC GAGGCGCTGC TCGCCAATCC GCTGCTCGAT CCGCAGACGG AAGCTGCGCA ATATGTCGAC GCCGAGAAAG GCATCGCGGA CGTCAAGGCC GCGCTCGACG GTGCGCGTGA CATCCTCTCG GAGCAGTTCG GCGAAACGGC CGACGTGCTC GGCAAGCTGC GCGACTATCT GTTCAATCAA GGCGTCCTGA CGTCGACGGT GATCGAAGGC AAGGAAGGCG ACGAAGGCGA GAAATTCCGC GACTACTACG ACTATTCCGA AACGATCCGC ACGGTGCCGT CGCACCGCGC GCTCGCGCTC TTCCGCGGCC GCAATGCGGG CGTGCTGATG ATCAAGCTCG GGCTTGGCGA AGAACTGGAC GCACAGGTGC CGCATCCCGG CGAAGCGATG ATCGCGCGGC ACTTCGGCAT TGCGAATCAG GGCCGTCCCG CCGACAAGTG GCTGGCGGAC GTGTGCCGCT GGTGCTGGCG CGTGAAGGTG CAGCCGCACA TCGAAAACGA ACTGTTGACG AATCTGCGCG AGGAAGCCGA AAGCGAGGCG ATCCGCGTGT TCGCGCGCAA CCTGGAGGAT CTGCTGCTCG CCGCACCGGC CGGCCCGAAG GCCGTGATCG GCCTCGATCC GGGCCTGCGC ACGGGCGTGA AGGTAGCCGT CGTCGATCGC ACGGGCAAGC TGCTCGCGAC CGATACGATC TATCCGCACG AGCCGCGTCG CGACTGGGAC GGCTCGCTCG CGAAACTCGC GCGCATTGCC GCGCAGACGC AGGCGGAACT GGTGAGTATC GGCAACGGCA CGGCATCGCG TGAAACGGAC AAACTGGCGA GCGAACTGAT CACGCGTCAT CCCGAGCTGA AGCTGCAGAA GATCGTCGTG TCGGAAGCGG GTGCGTCGGT GTACTCGGCG TCGGAGCTGG CCGCGAAGGA ATTCCCGGAA CTGGATGTAT CGCTGCGCGG CGCGGTGTCG ATTGCACGAC GCCTGCAAGA CCCGTTGGCG GAACTCGTAA AAATCGAGCC GAAGGCGATC GGCGTCGGCC AGTATCAGCA TGACGTGAAC CAGCGCGAAC TCGCGCGTTC GCTCGATGCC GTCGTCGAAG ACTGCGTGAA CGCGGTCGGC GTAGATGCGA ATACGGCGTC CGTCGCGCTG CTTGCACGCG TGTCCGGCCT GAACGCGACG CTCGCGCGCA ACATCGTCGA TTATCGCGAT GCGAACGGCC CGTTCCCGAC GCGCGAGCAT CTGCGCAAGG TGCCGCGCCT CGGCGACAAG ACTTTCGAGC AGGCTGCAGG CTTTTTGCGG ATTAACGGCG GCGAGAATCC GCTCGATCGT TCTTCGGTGC ACCCGGAAGC GTATCCCGTG GTCGAGCGGA TGCTGGCGAA GATCGCGAAG AACATCGGTG AGGTACTCGG CAATCGCGAT GCGCTTTCAC GGCTGTCGCC TGCCGAATTC GTCGATGAGC GCTTTGGTCT GCCGACGGTG CGCGACATTC TCGCCGAACT CGAGAAGCCG GGCCGCGATC CGCGCCCCGA GTTCAAGACA GCGACGTTCC GTGAAGGCGT CGAGAAGATT TCGGATCTGT CGCCCGGCAT GGTGCTCGAA GGCGTCGTGA CGAATGTGGC CGCGTTCGGT GCGTTTATCG ATATTGGTGT CCATCAGGAT GGACTCGTGC ATGTGTCGGC AATGTCGACG AAGTTCATCA AGGATCCGCA CGAAGTCGTG AAGGCCGGGC AGATCGTCAA GGTGAAGGTG CTGGAGGTCG ACGTCAAGCG TCAGCGGATT TCGTTGACGA TGCGGATGGA CGACGATGTT GCTGCCAGCG GTGGTGGCGC GGCGGCGCGC GCGGGGCAGC AGGATCGGGG TGGGCGGTCG GGCGGCGCAG GTGCCCGGGC GCAGCAGTCC CGGTCTCGGG ACGCCGAGCC CGTTAATGCG ATGGCTGCTG CTTTCGCCAA ATTGAAGCGG TAA
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Protein sequence | MTDTVALKIV QRIATELTVQ PRQVAAAVAL LDEGATVPFI ARYRKEVTGN LDDTQLRTLE ERLLYLRELE NRRAAIIASI DEQGKLTDEL RTAIEAADSK QVLEDLYLPY KPKRRTRAQI AREAGLQPLA EALLANPLLD PQTEAAQYVD AEKGIADVKA ALDGARDILS EQFGETADVL GKLRDYLFNQ GVLTSTVIEG KEGDEGEKFR DYYDYSETIR TVPSHRALAL FRGRNAGVLM IKLGLGEELD AQVPHPGEAM IARHFGIANQ GRPADKWLAD VCRWCWRVKV QPHIENELLT NLREEAESEA IRVFARNLED LLLAAPAGPK AVIGLDPGLR TGVKVAVVDR TGKLLATDTI YPHEPRRDWD GSLAKLARIA AQTQAELVSI GNGTASRETD KLASELITRH PELKLQKIVV SEAGASVYSA SELAAKEFPE LDVSLRGAVS IARRLQDPLA ELVKIEPKAI GVGQYQHDVN QRELARSLDA VVEDCVNAVG VDANTASVAL LARVSGLNAT LARNIVDYRD ANGPFPTREH LRKVPRLGDK TFEQAAGFLR INGGENPLDR SSVHPEAYPV VERMLAKIAK NIGEVLGNRD ALSRLSPAEF VDERFGLPTV RDILAELEKP GRDPRPEFKT ATFREGVEKI SDLSPGMVLE GVVTNVAAFG AFIDIGVHQD GLVHVSAMST KFIKDPHEVV KAGQIVKVKV LEVDVKRQRI SLTMRMDDDV AASGGGAAAR AGQQDRGGRS GGAGARAQQS RSRDAEPVNA MAAAFAKLKR
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