| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1279 |
|---|
| Symbol | |
|---|
| ID | 6242771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 1435143 |
|---|
| End bp | 1436243 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642593057 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001857508 |
|---|
| Protein GI | 186476038 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.49233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC GGGTGGTGGG CCAACTGGCT GCGCTGGTAC TGTGCGCGAC GCCTTTCATG
ACGGCGGCGG CAAAAGATAC ACAACTGAAT GTGTACAACT GGTCGGACTA CATCGCCAAG
GACACGATCC CGAACTTCAC AAAGCAGACG GGCGTCCAGG TCAAGTACGA CAACTACGAT
AGCGACGACA CGCTGCAGGC CAAGCTGCTG ACGGGCAATT CGGGCTACGA CATCGTCGTG
CCGACCAGCA ACTACGCAGG CAAGCAGATC GCAGCGGGCA TCTTCGCGCC GCTCGACAAG
TCGAAGATCC CCAATCTCAA GTACCTCGAT CCGGCGCTAA TGGCGCTCGT CGCGGGTGCC
GACCCGGGCA ACAGGTTCAC GGTGCCCTGG GCGTACGGCA CGACGGGCCT CGGCTACAAC
GTGACGAAGG CGCAGCAGAT TCTCGGCAAG GGCGTCGCGC TCGACAACTG GGACATCCTG
TTCAAGCCGG AAAACATCTC GAAGCTCAAG GCGTGCGGCG TCTCGGTACT CGACGCGCCG
GACCAGATGT TCGCGGCCGC GCTGCATTAC ATCGGTAAGG ATCCGATGAG CACGAATCCC
GCTGATTATC GTGAAGCCCT CGCGATGATG AAGAAGATCC GTCCGTACAT CACGCAGTTC
AACTCGTCGG GCTATATCAA CGACATGGTT GGCGGCGACG TGTGTTTTGC ATATGGCTGG
TCGGGCGACG TCGTGATCGC GAAGCATCGC GCGGCGGAAG CGAAGAAGCC ATACAAGATC
GACTATTACA TTCCGAAGGG CGGCGCGCCC GTGTGGTTCG ACGTGATGGC GATTCCGAAG
GACGCGAAGA ACAAGGAAGC GGCCACGGAG TGGATCAACT ACATCGAGAC GCCGCAGGTT
CATGCGGCCA TCACCAACGC GGTGTACTAC CCGAGCGCAA ATGCGGAAGC GCGCAAGTAC
GTGGACAAGG ATGTCGCGAA TGATCCCGCC GTCTATCCGC CGGCGGACGT CGTCAAGACG
CTGTTCCTGC TCAAGCCGCT GCCGGCTGAG ATCCAGCGTC TGCAGACGCG GCTGTGGACC
GAGTTCAAAT CCGGCCGCTA A
|
|---|
| Protein sequence | MKKRVVGQLA ALVLCATPFM TAAAKDTQLN VYNWSDYIAK DTIPNFTKQT GVQVKYDNYD
SDDTLQAKLL TGNSGYDIVV PTSNYAGKQI AAGIFAPLDK SKIPNLKYLD PALMALVAGA
DPGNRFTVPW AYGTTGLGYN VTKAQQILGK GVALDNWDIL FKPENISKLK ACGVSVLDAP
DQMFAAALHY IGKDPMSTNP ADYREALAMM KKIRPYITQF NSSGYINDMV GGDVCFAYGW
SGDVVIAKHR AAEAKKPYKI DYYIPKGGAP VWFDVMAIPK DAKNKEAATE WINYIETPQV
HAAITNAVYY PSANAEARKY VDKDVANDPA VYPPADVVKT LFLLKPLPAE IQRLQTRLWT
EFKSGR
|
|---|
| |