| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1020 |
|---|
| Symbol | |
|---|
| ID | 6242518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 1145342 |
|---|
| End bp | 1146934 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642592799 |
|---|
| Product | carbohydrate kinase, YjeF related protein |
|---|
| Protein accession | YP_001857255 |
|---|
| Protein GI | 186475785 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATG CCCCTCTCGC TATTCCCTCA TTGCCCCCGG CTCAAGCCGT TCTCATCAAC
CCGTACGACC GCCCGTTCAC GCTGCTGAGC GTCGCCGAAT TGCGCGCGCT CGAACAAGAT
GCCGGGGCGT CGCTGCCTGC CCATACGTTG ATGGGACGTG CCGGACACGC GGGCGCGCGC
TTCCTGCTCG AACATATCGC GCACGACGGC TCGGCCGATC CTTACCAGCC CGTGTGGCTC
GTCGCCGGGC CCGGTAACAA CGGCGGCGAT GCGCTCGTCG TTGCGGCGGA ACTGCGGCGC
GCGGGCGTCG CTGTGGAAGT CTGCATGCCC GTCGAAGTGA GGCCCGACGA TGCCCGCTGG
GCGCTCACCG AAGCGCGCGC TGCGGGCGTC GCCATCTCGA ACGCCGTGCC TGCCTCGTTC
GATCGTTACG GCTGGGTGGT CGACGGCATG TTCGGTATCG GGCTCGCGCG ACGGCTGGAA
GGGGTGTTCG AGTCGATCGC GACGCAGCTG TCGGCACGTG CCAAGACGCG CGGCCGCGTG
CTTGCACTCG ACGTACCGAG CGGCCTCGAC AGCGACACGG GCAACGTCGT CGAAGGCGGC
GTCGCGGTGC GCGCGACCAA CACGGTCACG TTCATCGGCG CCAAGCCCGG GCTGTTCATG
TCGTCAGGAC GCGATCTGGC CGGCGACGTG ACGGTTGCGC CAATTGGCGT CGAAGGGCCG
CGTCAGCCGG CTGTCCGGTT GAACGGGCCT GCCCTGTTCG TCCCGTATTT CCCGCCGCGC
GATTTCTCGA CACACAAAGG CACGTTCGGC AGTCTCGCCG TCGTGGGCGG CGACACGGGC
ATGTGCGGCG CGCCCATTCT GGCCGCGCGC GCCGCCTTAT TTGCCGGCGC GGGCAAGGTT
CATGTCGCCT TCCTCGGTGC AGGCAGTCCG CCGTACGACC CGCCGCACCC TGAGCTGATG
CTCCATCCGC TCGACGAACT ACCGCTCGCG ACAATGGACG CGCTGTCGAT CGGCTGCGGC
ATGGGCAAGC GCGAACGCGC CGTCGGCGTG TTGCGCGACG TGCTGCGCCT GAAGGTTCCC
ACATTGCTGG ACGCCGACGC GCTGAATCTC GTCGCCCACC ATGCCGAGCT CGCCGCCGCC
GTGAAGCAGC GCGGTGAAAC GGGGAACGAT CCGTGCGTGC TGACGCCCCA TCCGCTCGAA
GCGGCGCGCC TGCTCGGTTC GGACGCGAAG AGCGTGCAGC GCGACAGGCT GGCGGCAGCG
CGCGAACTCG CGGCGCGTTA CGCGTGCGTC GCCGTGCTGA AGGGGACAGG TACGGTGATC
GCGGCGGCGG ATGGTCGTGT CTGCGTCAAC CCGACGGGGA ATGCGGCGCT CGCGACGGGC
GGCACGGGGG ACGTCCTCGG CGGCCTGATA GGCGCATTGC TCAGCCAGGG GCTGCCGCAC
TATGAGGCTG CGCTCGCGGG CGTCTATCTG CATGGTCTCG CAGCGGAAAA GCTCACCGTG
CGCGGTAGAG GGCCCGCAGG CCTGACGGCA GGCGAGCTCG CGCCGATGGT GCGCAAGCTG
TTGAATCGGC TCGTCTATCC GTTGCGTGAC TGA
|
|---|
| Protein sequence | MTDAPLAIPS LPPAQAVLIN PYDRPFTLLS VAELRALEQD AGASLPAHTL MGRAGHAGAR
FLLEHIAHDG SADPYQPVWL VAGPGNNGGD ALVVAAELRR AGVAVEVCMP VEVRPDDARW
ALTEARAAGV AISNAVPASF DRYGWVVDGM FGIGLARRLE GVFESIATQL SARAKTRGRV
LALDVPSGLD SDTGNVVEGG VAVRATNTVT FIGAKPGLFM SSGRDLAGDV TVAPIGVEGP
RQPAVRLNGP ALFVPYFPPR DFSTHKGTFG SLAVVGGDTG MCGAPILAAR AALFAGAGKV
HVAFLGAGSP PYDPPHPELM LHPLDELPLA TMDALSIGCG MGKRERAVGV LRDVLRLKVP
TLLDADALNL VAHHAELAAA VKQRGETGND PCVLTPHPLE AARLLGSDAK SVQRDRLAAA
RELAARYACV AVLKGTGTVI AAADGRVCVN PTGNAALATG GTGDVLGGLI GALLSQGLPH
YEAALAGVYL HGLAAEKLTV RGRGPAGLTA GELAPMVRKL LNRLVYPLRD
|
|---|
| |