| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0981 |
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| Symbol | |
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| ID | 6242479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010622 |
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| Strand | + |
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| Start bp | 1096745 |
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| End bp | 1099609 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642592757 |
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| Product | DNA ligase D |
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| Protein accession | YP_001857216 |
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| Protein GI | 186475746 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA AGCTCGAGAC CTATCATCGC AAGCGACGCT TCAATGAAAC GCCAGAGCCG
TCGGGCGTTG CCACACGCGG AAACGGCAGG CAGGCCGCCA AGCCGGCGCC CCCGGGAAAA
GCAGCCAGGC AGCACGACCT GTCGTTCGTG ATCCAGGAGC ACGACGCGCG GCGTCTGCAC
TACGACTTCC GTCTCGAACT CGACGGTACC TTGAAGTCAT GGGCGGTGCC GAAGGGGCCG
AGCCTCGATC CATCGGTCAA ACGGCTCGCG GTGCATGTCG AAGATCATCC CATCGAATAC
GGCTCGTTCG AGGGCGACAT TCCCGAGGGT AATTACGGCG CGGGTTCCGT GATCGTCTGG
GATCGCGGCA CATGGGAACC CGTCGGCGGC GAAGCGGGCG CGCGCGACGC GTACGCGGCG
GGCAAGCTCA AGTTTCATCT GAAGGGTCAC AAGCTGCACG GCGGCTGGAC GCTCGTGCGC
AGCCATATGC GCGGCAGCGG CGACAAGGAG CAATGGCTGC TCATCAAGGA GCGCGATGAC
GAGGCGCGCA GCGAAGCCGA CTTCGACGTG CTCGAACAGC GGCAGGGCAG CGTGCTGTCG
GATGCACCGG GCGCGCGCGG CGGTGCAAAA GGAGCGGCCC GACCCGTCGC CGGCAAATGG
AAGACCAGGG AAGAGCGTGC GAACGCGTCG GTCAGGGCGT CGAAGGCGGC GGCGTCACGC
AGGGCCAAAG GCACGCCCGA CGATCGCCCC GACATCGTCG CGACGCGCAA CTCGCAGTCG
CTGCGAGAAC TCGCGCAGCA TCCGTCGATC GAAGGCGCGG TCGAGGCGAA GCTGCCTGCC
GCGCTCAAGC CGCAGCTCGC GACGCTCGTC GACAGCGCGC CGGCCGGCGA CGACTGGCTT
TACGAGATCA AGTTCGACGG CTACCGCATC CTGGCGCGCA TCGATCACGC ATCGAAGGAG
CCCGTGAAGA TTTTCACGCG TGCGGGCAAC GACTGGAGCG CGAAGTTCGG CAAGCAGGTG
AAGGCGATTG CGCGCGTCGG TGTGGGCAGC GCGTGGCTCG ACGGCGAAGC GGTGGTGCTC
GACAGCCACG GCGTGCCGGA TTTCCAGGCG CTGCAAAATG CCTTCGATGC GAACCGTCCG
CAAGACATCA CGCTCTATCT GTTCGACTTA CCGTATCTCA ACGGCTACGA CTTGCGCGGC
GTGCCGCTCG AACAGCGTCG CGCGATCCTG CGCGCGCTGC TCGACACCGT CGACGACGAC
ACATTGCGCT TCTCGTCCGA CTTCGGCTTC GACGCCGATC AGTTGCTGAA GAGCGCATGC
GACATGCAGC TGGAAGGCAT CATCGGCAAG CGCCGCGACA GCCTGTATGT GTCGGGCCGC
TCGCCCGCGT GGATCAAGCT CAAGTGCCGG CGCCGGCAGG AGTTCGTGAT CGGCGGCTAT
ACGGAACCGG CGGGCAGCCG CGAGGCGTTC GGCGCGCTGC TGCTCGGTGT ATATGACGCG
AAGGGACAGC TGCAATACGC GGGGCGAGTC GGCACGGGTT TCGATGCAAG CCGGTTGCGC
TCCATCAAGA AGGAACTGGA CGGGCGCGAA ACGGCGACGA TGCCGTTCGC GAGCGAGCCG
CGCGAACGAA GCCGCACGCG CGTGCATTGG GTGAAGCCCG AACTCGTCGC AGAATGCAAC
TTCGCGGAAT GGACGAGCGA CGGCGTCGTG CGGCAGGCGT CGTTCGTCAG TCTGCGCAGC
GACAAGCCCG CGCAACAGAT CGTCCATGAA GCGCCACGCA AGGGGGCTGA CGTGCAACAT
ATCGCGGAAG AATCGGGTGC CGGGCAGACG AAGACGTCGA CGGCGAAACA GCGGGTGTCG
AAGATGCCGG ATGTTCGGGA CGCGCCCAAG ACCACAACGA AGCGCGCGGG CGCGTCTTCA
ACCAGCGTCG GCAGTGCCGC CGCGAAATCG TCCGGCAAGA CGGGTGCGGC GACCGTCTCT
GGCGTACGCA TCTCGCATCC CGACCGCGTA ATCGACAAGA GCACCGGCGT GCGCAAGCTC
GAACTCGCTG AATACTACGC ATCGGTTGCG ACGTGGATGC TTCCGTATCT GAAGGACCGC
CCCGTTGCGC TCGTGCGAGC GCCGGAGGAC ATCGGCGGCG AGCTGTTCTT CCAGAAGCAC
AGCCAGAGGC TCGCGATCCC GAACATCACG CAGCATCCCG GACTGGACCC CGGTCATCCG
CCGCTGCTGA CGATCGAGAG CGAAGCGGCG CTGGTCGGCG CAGCGCAGAT GGGCACGATC
GAACTGCACA CGTGGAACGC GGTGGCCGCG AACATCGAGA AGCCGGACCG CATGGTGTTC
GATCTCGACC CGGACCCGGC GCTCGGCTGG AAGCGGATGA TCGAAGCAGC GCAGCTCACG
CGCGAGCTGC TCGCCGAACT AGGCCTTGAG TCGTTTTGCA AGACGAGCGG CGGCAAGGGG
CTGCACGTCG TCGTGCCGAT CGCGAAGCAG CTGGGCTGGG ACGACGTGAA GGTGTTTTCG
CAAGCCGTCG CGCAGCATAT GGCGACCGCG CTGCCGAAAC ACTTCGCTGC GAAGATGGGC
GCGCAGAACC GCAAGGGCAA GATTTTCGTC GACTATCTGC GCAACAACCG CGGTTCGAGC
ACCGTCTGCG CGTACTCGCT ACGCGCGCGT CCTGGCCTGG GGGTGTCGGT ACCGCTCACG
TGGGATGAAG TGCCCGAGAC CACGGCAGGC GATCAATGGA ACATCGCGAA CGTCCATGAG
CGGCTCGACG CGCTGAAGCG CGATCCGTGG GCCGATTACG CGAAGACCCG GCAGCGCATC
ACAGCCGCCA TGCGGCGCAG GCTCGATACG GCGGAACGCG ATTGA
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| Protein sequence | MTDKLETYHR KRRFNETPEP SGVATRGNGR QAAKPAPPGK AARQHDLSFV IQEHDARRLH
YDFRLELDGT LKSWAVPKGP SLDPSVKRLA VHVEDHPIEY GSFEGDIPEG NYGAGSVIVW
DRGTWEPVGG EAGARDAYAA GKLKFHLKGH KLHGGWTLVR SHMRGSGDKE QWLLIKERDD
EARSEADFDV LEQRQGSVLS DAPGARGGAK GAARPVAGKW KTREERANAS VRASKAAASR
RAKGTPDDRP DIVATRNSQS LRELAQHPSI EGAVEAKLPA ALKPQLATLV DSAPAGDDWL
YEIKFDGYRI LARIDHASKE PVKIFTRAGN DWSAKFGKQV KAIARVGVGS AWLDGEAVVL
DSHGVPDFQA LQNAFDANRP QDITLYLFDL PYLNGYDLRG VPLEQRRAIL RALLDTVDDD
TLRFSSDFGF DADQLLKSAC DMQLEGIIGK RRDSLYVSGR SPAWIKLKCR RRQEFVIGGY
TEPAGSREAF GALLLGVYDA KGQLQYAGRV GTGFDASRLR SIKKELDGRE TATMPFASEP
RERSRTRVHW VKPELVAECN FAEWTSDGVV RQASFVSLRS DKPAQQIVHE APRKGADVQH
IAEESGAGQT KTSTAKQRVS KMPDVRDAPK TTTKRAGASS TSVGSAAAKS SGKTGAATVS
GVRISHPDRV IDKSTGVRKL ELAEYYASVA TWMLPYLKDR PVALVRAPED IGGELFFQKH
SQRLAIPNIT QHPGLDPGHP PLLTIESEAA LVGAAQMGTI ELHTWNAVAA NIEKPDRMVF
DLDPDPALGW KRMIEAAQLT RELLAELGLE SFCKTSGGKG LHVVVPIAKQ LGWDDVKVFS
QAVAQHMATA LPKHFAAKMG AQNRKGKIFV DYLRNNRGSS TVCAYSLRAR PGLGVSVPLT
WDEVPETTAG DQWNIANVHE RLDALKRDPW ADYAKTRQRI TAAMRRRLDT AERD
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