| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0896 |
|---|
| Symbol | |
|---|
| ID | 6242394 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 1000872 |
|---|
| End bp | 1002254 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642592671 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001857131 |
|---|
| Protein GI | 186475661 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0613531 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACGATC GCGCCGACCA TGCTGCGCCG CCGGATGCCG CGCCCCATGC GGACGCCGCG
CCGACGTACT GGCACCGGCG CGTGCTCACG CTCGCGTTTC CAATCGTCCT CGCCAACCTG
ACGCAGCCGA TACTCGGCGC CGTCGATACG GCCGTCGCCG GCCATCTGGA CAGCGCGTCC
TATCTCGGCG GCGTTGCGCT CGGCGGGCTG TTCTTCAGCT TCGTGTTCTG GGGCTTCGGC
TTTCTGCGCA TGGGCACGAC GGGGCTCGTC GCGCAATCGT TCGGCGCAGA CGATCCGGCC
GGCCTGCGTT TGAACATCGT ACGCGCGATG CTGCTCGCCT TTGCGATCGG CGCGATCGTC
CTCGCATTGC AGGTTCCGCT GATCGACTTC GCCGTGCGCA CGATCGGCGG CAGCGACGAA
GTTCAGCGCC ACGCACGCGC CTACTGCCAT GCCCGTATCT GGGCGGCCCC GCTCGCGCTC
GGCAACTATG TCGTGCTGGG CTGGCTGCTC GGCACGCAGC GCGTGCGCGT TGCGCTCGCG
ACGCAGATCT TTATCAACAC GGTGAACATC GTCGCCGTGC TGCTCTACGT GTATGCGTTC
GACTGGGGCG TGGCAGGCAT CGGCGCGGCG ACGGCGACAG CCGATGCACT CGGCTTCGTG
TTCGGCGCCG TGCTGCTGTG GCAGATGCGT CCGCGCAACC TGCCCGCGCT CGAACGCGCC
GCGCTGTTCG ATGCGTCGGC GCTCGGGCGC CTGGTGGCGA TCAACCGCGA TATCTTCGTG
CGGACGATGT GCCTGCTCGG CGCTTTCGGC TGGTTCGCGC ATCTCGGTGC TAAACAGGGC
GACGCGACGC TCGCGTCGAA CGCGCTGCTG CTCAACTTCC AGACCTTCAT GGGCTATGGG
CTCGACGGCT TTGCACACGC AGCGGAAGCG CTCGTCGGCG CGGCCATCGG CGCGCGCGAT
CGCGAGGCGT TCCGCCAGGC CGTCAAAGCG ACGCTGCTCT GGTCGGCGCT CGGCGCGCTC
GCTTTCTCGC TGGTTTACTG GCTGACGGGC CCGTGGATCA TCGAACGGCT GACCGATCAA
GCCACCGTGC GCGCGACGGC GCAAGCCTAC CTGCCGTGGA CGGCGCTCTC GCCCGTCGTC
TCCGTGTGGG GTTTTCTGCT CGACGGCGTG TTCATCGGCG CGACGCGCAC GCGCGATCTG
ATGACATCGA TGGTCGTGTC GCTCGGCGTG TTTCTTGCCG CTTCGTGGGC GCTCACCGGC
ACGCACGGCA ACCACGGACT GTGGGCGGCG CTGCTGATCT TCATGGCAGC GCGCGGCCTC
ACGCTCGCAC GCCTGCTGCC TCGCCTCACC CTCGATGTCG GCCCCGCGTG CGGCGCTCCC
TGA
|
|---|
| Protein sequence | MNDRADHAAP PDAAPHADAA PTYWHRRVLT LAFPIVLANL TQPILGAVDT AVAGHLDSAS
YLGGVALGGL FFSFVFWGFG FLRMGTTGLV AQSFGADDPA GLRLNIVRAM LLAFAIGAIV
LALQVPLIDF AVRTIGGSDE VQRHARAYCH ARIWAAPLAL GNYVVLGWLL GTQRVRVALA
TQIFINTVNI VAVLLYVYAF DWGVAGIGAA TATADALGFV FGAVLLWQMR PRNLPALERA
ALFDASALGR LVAINRDIFV RTMCLLGAFG WFAHLGAKQG DATLASNALL LNFQTFMGYG
LDGFAHAAEA LVGAAIGARD REAFRQAVKA TLLWSALGAL AFSLVYWLTG PWIIERLTDQ
ATVRATAQAY LPWTALSPVV SVWGFLLDGV FIGATRTRDL MTSMVVSLGV FLAASWALTG
THGNHGLWAA LLIFMAARGL TLARLLPRLT LDVGPACGAP
|
|---|
| |