| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0746 |
|---|
| Symbol | rpsA |
|---|
| ID | 6242244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | + |
|---|
| Start bp | 842190 |
|---|
| End bp | 843959 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642592514 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_001856981 |
|---|
| Protein GI | 186475511 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.46132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACC GTGACGGTTC ACCTGACGCT GCGAAAACCA TGCAAATTCA GATTTTTATG
TCCGACCTGC AAACCTCTAC CCCGAATACC GAATCTTTTG CGGCTCTGTT CGAAGAGTCG
CTGACCAAGC AGGACATGCG CGCGGGCGAA GTGATCTCCG CCGAAGTCGT GCGTGTCGAC
CACAACTTCG TGGTCGTGAA CGCTGGTCTC AAGTCCGAAG CCTACATCCC GCTCGAAGAG
TTCCTGAATG ACGCGGGCGA GGTAGAAGTG CAGGCGGGCG ACTTCGTTTC CGTCGCGATC
GACGCGCTGG AAAACGGCTA TGGCGACACC ATCCTGTCGC GCGACAAGGC GAAGCGCCTC
GCTTCGTGGC TGTCGCTGGA AAAGGCCCTC GACAACAACG AACTCGTGAC GGGCACGATC
ACGGGCAAAG TCAAGGGCGG CATGACCGTC ATGGTCAACG GCATCCGCGC GTTCCTGCCG
GGCTCGCTGG TCGACACGCG CCCGGTGAAG GACACGACGC CGTACGAAGG CAAGACGCTG
GAATTCCGCG TCATCAAGCT GGATCGCAAG CGTAACAACG TGGTGCTGTC GCGCCGCGCA
GTGATCGAAG CGACCCAGGG CGAAGAACGC GCAAAGCTGC TCGAAACGCT GAAGGAAGGT
GCGATCGTCG AAGGTGTGGT CAAGAACATC ACCGACTACG GCGCGTTCGT GGACCTCGGC
GGTATCGACG GCCTGCTGCA CATCACCGAC ATCGCATGGC GTCGCGTGCG TCACCCGAGC
GAAGTTCTGT CGGTTGGCCA GGAAGTCACG GCAAAGATTC TCAAGTTCGA CCAGGAAAAG
AACCGCGTTT CGCTCGGTAT CAAGCAACTG GGCGATGATC CGTGGGAAGG CATCTCGCGC
CGCTACCCGT CGGGCACGCG CCTGTTCGGC AAGGTCACGA ACATCACCGA CTACGGCGCG
TTCGTTGAAG TCGAGTCGGG CATCGAAGGC CTCGTGCACG TGTCGGAAAT GGACTGGACG
AACAAGAACG TTGCACCGTC GAAGGTTGTC CAGCTGGGCG ATGAAGTCGA AGTCATGGTC
CTCGAGATCG ACGAAGACCG CCGTCGTATC AGCCTCGGCA TGAAGCAGTG CAAGCCGAAT
CCGTGGGATG ACTTCAGCCG CAACTTCAAG AAGGGCGACA AGCTGCAAGG CGCCATCAAG
TCGATCACCG ACTTCGGCGT CTTCATCGGT CTGCCTGGCG GCATCGACGG TCTGGTTCAC
CTGTCGGACC TGTCGTGGTC GGAAACGGGC GAAGAAGCTG TTCGCAAGTA CAAGAAGGGC
GACGAAGTGG AAGCGATCGT TCTCGGCATC GACGTCGAGA AGGAACGCAT TTCGCTGGGC
ATCAAGCAGC TCGAAGGCGA CCCGTTCAGC AACTTCGTTG CAATGAACGA CAAGGGTTCG
ATCGTCGACG GCGTGGTCAA GACGGTGGAC GCGAAGGGTG CAGTGGTTCA GCTGACGGCT
GACGTCGAAG GCTACCTGCG CGCTTCGGAA ATCGCACAAG ACCGTGTGGA AGACGCTCGC
AATGTGCTGA AGGAAGGCGA CAAGGTCAAT GCGATGATCA TCAACATCGA CCGCAAGTCG
CGCGGCATCA ACCTGTCGAT CAAGGCGAAG GATTCGGCTG AGCAGCAGGA AGCGATGCGC
GGCCTGCAAG CCGACACGAG CTCGGCAGCA AGCGGCACGA CGAACCTCGG CGCGCTGCTG
AAGGCCAAGC TCGACGGCCA GAACCAGTAA
|
|---|
| Protein sequence | MMNRDGSPDA AKTMQIQIFM SDLQTSTPNT ESFAALFEES LTKQDMRAGE VISAEVVRVD
HNFVVVNAGL KSEAYIPLEE FLNDAGEVEV QAGDFVSVAI DALENGYGDT ILSRDKAKRL
ASWLSLEKAL DNNELVTGTI TGKVKGGMTV MVNGIRAFLP GSLVDTRPVK DTTPYEGKTL
EFRVIKLDRK RNNVVLSRRA VIEATQGEER AKLLETLKEG AIVEGVVKNI TDYGAFVDLG
GIDGLLHITD IAWRRVRHPS EVLSVGQEVT AKILKFDQEK NRVSLGIKQL GDDPWEGISR
RYPSGTRLFG KVTNITDYGA FVEVESGIEG LVHVSEMDWT NKNVAPSKVV QLGDEVEVMV
LEIDEDRRRI SLGMKQCKPN PWDDFSRNFK KGDKLQGAIK SITDFGVFIG LPGGIDGLVH
LSDLSWSETG EEAVRKYKKG DEVEAIVLGI DVEKERISLG IKQLEGDPFS NFVAMNDKGS
IVDGVVKTVD AKGAVVQLTA DVEGYLRASE IAQDRVEDAR NVLKEGDKVN AMIINIDRKS
RGINLSIKAK DSAEQQEAMR GLQADTSSAA SGTTNLGALL KAKLDGQNQ
|
|---|
| |