| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0547 |
|---|
| Symbol | |
|---|
| ID | 6242048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 618653 |
|---|
| End bp | 620122 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642592311 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001856785 |
|---|
| Protein GI | 186475315 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.387969 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAT CGACCAAATC GGCCTCTGCC ACCGCCGGCG ACCGCACCGG CAAACCCACG
CCAACGGCCC GCTCACTGAC AGTGATGCTG TGGATCGTCG CGACGGGCTT CTTCATGCAG
ACGCTCGATT CGACCATCGT CAACACCGCC TTGCCCGCGA TGGCGCGCAG CCTGGGCGAG
CTGCCGTTGC GCATGCAATC GGTTGTGATC GCGTATTCGC TGACGATGGC CGTGATGATC
CCCGTCTCCG GCTGGCTCGC CGACAAGCTC GGCACACGCC GCGTGTTCAT GGCCGCGATC
CTCGTTTTCA CGATCGGCTC GCTGCTGTGT GCGAATGCGC AGACGCTCAC ACAGCTCGTG
GTCTATCGTG TGCTGCAGGG CGTGGGCGGC GCGATGCTGC TGCCCGTCGG CCGGCTTGCT
GTGCTGCGCG TGTTCCCCGC TGAGCGCTAT CTGCCCGCGC TGTCGTTCGT CGCAATTCCC
GGGCTGATTG GACCACTGAT CGGCCCGACG CTCGGCGGCT GGCTCGTCAA GATCGCCTCG
TGGCACTGGA TCTTCCTGAT CAACGTGCCC GTCGGCATCG TGGGCGTCAT CGCGACGTTC
GTCTTCATGC CCGACAGCCG CAATCCCGAC ACCGCGACGT TCGACATCAA GGGCTACGTG
CTGCTGATCG TCGGCATGGT GTCGATCTCG ATGGCGCTCG ACGGGCGCAC CGAATTTTCG
ATTCAGCACG CGACCGTGCT GATGCTGCTG ATTCTTTCGC TTGGCTGTTT CGTCGCCTAC
GGACTACATG CCGTGCGGGC GGCCAACCCG ATCTTTTCGC TCGATCTGTT CAAGATCCAC
ACGTTCAGCG TCGGACTGCT CGGCAACCTG TTTGCGCGCA TCGGCAGCGG CGCGATGCCG
TATCTGATTC CGCTGCTCTT GCAGGTGAGC CTCGGCTACA GCGCGTTCGA AGCCGGCCTG
ATGATGCTGC CCGTCGCTGC CGCCGGCATG TCGTCGAAAC GTCTCGTCAC GCGCCTCATC
ATGAAGTACG GCTACCGGCG CGTGCTCGTG TCGAACACGG TGCTCGTCGG GCTCGCGATG
GCGAGCTTCT CGCTGACGAG CGAGCATCAG CCGCTATGGC TGCGTCTCGT GCAACTCGCG
TTCTTCGGCG GCGTCAACTC GATGCAGTTC ACCGCAATGA ACACGCTGAC GCTGAAGGAT
CTCGGCACGG GCGGCGCGAG CAGCGGCAAC AGCCTGTTTT CGCTGGTGCA GATGCTTGCG
ATGAGCCTCG GCGTCACGGT CGCCGGCGCG TTGCTCACCA CCTTCACGGG TCTCATGCCG
CGTGTCACGG CAGCCAACTC GCTGCCCGCC TTTCATGCAA CCTTCCTGTG CGTCGGTCTG
ATTACGGCCG CGACGTCGTG GATTTTCGCG CAACTCTCGG CGGATATCCG GCAACCCACG
AAACGCGCCG ATCCGCAGGA ACGCACGTGA
|
|---|
| Protein sequence | MSESTKSASA TAGDRTGKPT PTARSLTVML WIVATGFFMQ TLDSTIVNTA LPAMARSLGE
LPLRMQSVVI AYSLTMAVMI PVSGWLADKL GTRRVFMAAI LVFTIGSLLC ANAQTLTQLV
VYRVLQGVGG AMLLPVGRLA VLRVFPAERY LPALSFVAIP GLIGPLIGPT LGGWLVKIAS
WHWIFLINVP VGIVGVIATF VFMPDSRNPD TATFDIKGYV LLIVGMVSIS MALDGRTEFS
IQHATVLMLL ILSLGCFVAY GLHAVRAANP IFSLDLFKIH TFSVGLLGNL FARIGSGAMP
YLIPLLLQVS LGYSAFEAGL MMLPVAAAGM SSKRLVTRLI MKYGYRRVLV SNTVLVGLAM
ASFSLTSEHQ PLWLRLVQLA FFGGVNSMQF TAMNTLTLKD LGTGGASSGN SLFSLVQMLA
MSLGVTVAGA LLTTFTGLMP RVTAANSLPA FHATFLCVGL ITAATSWIFA QLSADIRQPT
KRADPQERT
|
|---|
| |