| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0471 |
|---|
| Symbol | |
|---|
| ID | 6241972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | + |
|---|
| Start bp | 534937 |
|---|
| End bp | 536439 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642592235 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_001856709 |
|---|
| Protein GI | 186475239 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0438945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAA ATATGCTGAC CCGTAGCGCC GTCGCGGCGG CCGTCGTCAT CGCTTTGTCG
GCGGGTTATG TGGCCGGCCA CCGCAATGTC CCGGCGCCCG CGGTGATCAC CCCGGCCGTG
GCCGCGATGA TGCCCGCCGA AGCCGCGGCC AAAACGGGTA TCCCCGATTT CTCGGGTCTC
GTCGAAACTT ATGGTCCCGC TGTCGTCAAC ATCAGCGCGA AGCACGTCGT CAAGCAGACG
GCGATGCGCG GCGGCAACAA CAGCGGCCAG TTGCCCATCG ACCCGAGCGA TCCGTTTTAT
CAGTTCTACC GCCACTTTTT TGGCCAGATG CCGGGTGGCC CCAATGGCGG CGGTGACGAC
GGCGGCGACC GTCCGAGCGC GAGCCTCGGC TCCGGCTTCA TTATCAGCAG CGATGGTTAT
GTGCTGACCA ATGCGCACGT CGTCGACGGT GCGAACGTCG TCACCGTGAA ACTCACCGAC
AAGCGCGAGT ACAGGGCGAA AGTGGTCGGC GCCGACAAGC AGTCGGATGT CGCAGTCCTG
AAGATCGACG CGAAGGATCT GCCGACCGTG AAGATCGGCG ATCCGCGCCA GAGCAAGGTC
GGCCAGTGGG TCGTCGCGAT CGGCTCGCCC TACGGCTTCG ACAACACGGT GACGTCGGGC
ATCATCAGCG CGAAGTCGCG CTCGCTGCCG GACGAGAACT ACACGCCGTT CATCCAGACG
GACGTGCCCG TGAATCCGGG TAACTCGGGC GGCCCGCTGT TCAATCTGCA AGGCGAAGTG
ATCGGCATCA ATTCGATGAT CTATTCGCAG ACGGGCGGCT TCCAGGGCCT TTCGTTCGCT
ATCCCGATCA ATGAGGCGAT CAAGGTCAAG GACGATCTCG TAAAGACCGG CCACGTGAGC
CGCGGCCGTC TCGGCGTCGC GGTGCAGAGT GTGAACCAGA CGCTCGCGGA TTCATTCGGC
ATGAAGAAGC CGCAAGGCGC GCTGGTCAGC TCCGTCGATC CGGGCGGCCC GGCGGCGAAA
GCAGGCCTGC AGCCCGGCGA CGTGATCCTG TCGGTGGATG GCGTCGACGT GGTGGATTCG
GCGGCGCTGC CTTCGCAGAT CGCGGGCATC AGGCCGGGCA AGCAAGTCGA CGTGCAGGTG
TGGCGCGACA AGTCGACGAA AGATATGAAA GTGACGATCG GCTCGTTGTC CGACGTGAAA
GCGGCCGCGA ACGACGACGG TGGTCCCGCG CAGATGCAAG GCCGCCTCGG CGTCGCCGTG
CGTCCGCTGA CGCCGCAGGA GAAGAGCGGC GCGTCTGTGT CGCACGGTCT GTTGGTGCAG
GACGCGAGCG GCGCGGCGGC GAGCGCGGGT ATCCAGCCCG GGGACGTGAT TCTGGCCGTC
AACGGACGCG CGGTGTCGAG CGTCGATCAG CTGAAGCAGG CGGTATCTGG AGCAGGTAAC
AGCATCGCGC TCCTGATCCA GCGCGACAAC TCGCAGATCT TCGTGCCCGT CGATCTGGGC
TGA
|
|---|
| Protein sequence | MKANMLTRSA VAAAVVIALS AGYVAGHRNV PAPAVITPAV AAMMPAEAAA KTGIPDFSGL
VETYGPAVVN ISAKHVVKQT AMRGGNNSGQ LPIDPSDPFY QFYRHFFGQM PGGPNGGGDD
GGDRPSASLG SGFIISSDGY VLTNAHVVDG ANVVTVKLTD KREYRAKVVG ADKQSDVAVL
KIDAKDLPTV KIGDPRQSKV GQWVVAIGSP YGFDNTVTSG IISAKSRSLP DENYTPFIQT
DVPVNPGNSG GPLFNLQGEV IGINSMIYSQ TGGFQGLSFA IPINEAIKVK DDLVKTGHVS
RGRLGVAVQS VNQTLADSFG MKKPQGALVS SVDPGGPAAK AGLQPGDVIL SVDGVDVVDS
AALPSQIAGI RPGKQVDVQV WRDKSTKDMK VTIGSLSDVK AAANDDGGPA QMQGRLGVAV
RPLTPQEKSG ASVSHGLLVQ DASGAAASAG IQPGDVILAV NGRAVSSVDQ LKQAVSGAGN
SIALLIQRDN SQIFVPVDLG
|
|---|
| |