| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_0391 |
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| Symbol | |
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| ID | 6241893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010622 |
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| Strand | + |
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| Start bp | 444224 |
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| End bp | 447346 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642592155 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001856630 |
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| Protein GI | 186475160 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.519884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.119604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCTT TTCTATCGAA GCGGCTGCTG ATCAATCTGG CCGTCGTCGC GGCTGCCGTC
GGCGCGAACG CGTTCGTCGC GTACACGCAG ATCTGCGGAC AGCGCGACGC CGATGCGCGC
ACGGCCCGTT CGACGGCCAT CCGTCAGAAC CTGGAGGCCT ATCGCTCGAC GCTGGAGGAC
GGCCTCGACG TGCTCGGGCG CTACGAGGCC TCGGCCCAGC CCGCGCCCGC GAATACCGTG
GGGAGCATGT CCGCGTCGCT CGCGCAGATC GACCGGTCGC TGCATAAGCA GCTTGCGGAC
CAGCCGGGCG TCGGCGGGGC GCTCGATGCG CTCACGGTCA GCGGCAACCG CCTGCAGCAG
GACATCGCGG CCGCGCTTGC GAAAACCACG GCGCCCGAGC AGGACGGCTC ACGCGCCTGG
GCCGCGCAGA CCTACACGCG CCTCGGCATG GAAGTCGACC GCCTCGAAGC GCATATGGAA
CAGTTGCGCG CGCAGGAAGA TCGCGCGCTG AAAGCGGCGC TCGACGCGTC GATGCGCGAT
TCGCGCTACG CGATGCTGTT TCTGGTCGTG ACGATGCTCG CGGGCAGCGG GCTGCTGATC
TACACGTTCG GCGCACGGGA AAACGTCGCG CGGGAAAAGC TGCGCGTCGC GCGCACGCTG
CACCGGAGCG ACGAGCGCTT TCGCGGGCTG TTCGAGCAGC ATCCCGTGCC GATGTATATC
TTCGACCGCG ACACACTGCG CTTTCTCGCC GTGAACGCGG CGGCCGTCCA GCAATACGGC
TACTCGGAGA GCGAGTTTCT GGCGATGACG GTGCGCGCGA TCCGCCCGCA CTCCGAGGTC
GCGCGACTCG AAACCCATCT GCAGCGCAGC GACGTGACGC CGGGCGGCCC GCGCACGATG
GCGGGCGTCT GGCATCACCG GCGCAAGGAC GGTTCGCAGA TCAGCGCCGA CATTTCGTAT
CACGCGATGA CGTTCATGGG CCGGCCCGCG CTGTTCGTGC TGGCCGACGA CGTCACCGAG
CAGATCAACG CGGAAGCCGA AGCGCAGCGT TCGAACCAGA TGCTGGAAAC GGTGATCGAC
AATATTCCGC AGCGCATTTT CTGGAAGGAC AAGGAGCTGC GCTATCTCGG CTGCAACATG
GCGTTCGCGC GCGACGCGGG CCTCGCCTAT CCCGAGCAGG TGATTGGCAA GCGCGACGAG
GACATGCCGT GGCGCGCGTT CGCCGAGGCG CTCGGGCGCC AGGATACCGA CGTCATGTTG
TCCGGCGTGC CGAAGATGAA CTACGAAACC GACCTGGTGA TCGACGGCGT GCATCGCACG
ACGGTGACGA GCAAGCTGCC GTTCACCGAC AGCGACGGCC GCGTGATCGG CGTGCTCGGT
TCGTACACGG ACATCACGGA GCGCAAGCGC GCCGATCTCG CGCTGCGCCT GCAAAGCCGC
GCGCTCGATG CGAGCGTCAA TGCGATCCTG ATCACGGAGC CATCGAAGGA AGGCAACCTG
ATCGAATACG TGAACCCGGC GTTCAAGCGC ATCACGGGCT ACGATCCGCA GGAAGTGATC
GGCCAGGACT GCCGCCTGCT GCAGCGCGAC GACCGCGATC AGGAAGGCAT TGCCGCGATC
CGTCAGGCGC TCGCGGCAAA CCGCGAAGTG AGCGCGGTGC TGCGCAATTA CCGCAAGGAC
GGCGCGCTGT TCTGGAACCA GCTCTATATT GCGCCCGTGC CCGACGCGGA CGGACAGACC
ACGCATCACA TCGCCGTCAT CAACGACGTG ACCGCGCTCA TCCGCTACCA GGAACAGCTC
GAATATCAGG CGAACTACGA CAGCCTCACG CGCCTGCCTA ACCGCAACCT GCTGCGCGAC
CGCCTGCAAC ATGCGCTGAT CGTCGCGCAA CGGCATCACA AGGGCGTTGC CGTCGTGTTC
ATCGATCTCG ACGGCTTCAA GAACGTCAAC GACAGTCTGG GTCACAGCGT CGGCGACCGG
CTGCTGTCGG TGGTCGCGGA TCGTCTCGCG CGTTGCGCGC GGGCGAGCGA TACCGTCGCG
CGTCATGGCG GCGACGAGTT CGTGATCGTG ATGACGGATA CCGTCGACGA GCAGTCGCTC
ATCGCGTGGA TGGAACGCGT GCGCGCGTCG ATTTCGGAGC CCGTGTGGCT CGACGGCACG
GAGTTGTACG TCGGCTGCAG CATGGGCGCG AGCCTCTTCC CACAGGACGG CGACGACGCC
GAAACGCTGA TGAAGAAGGC CGATCTCGCG ATGTACCGCG CCAAGGACAT GGGCCGCAAC
ACGTTCCAGT TCTATCAGCC GGAAATGAAC GTATCGGCGG GCGCGCGGCT GAACCTCGAG
CGGCGCCTGC GCCGGGCACT GCGCGACAAC GAATTCCTGC TGCACTATCA GCCGCAGGTC
GATATCGAAA CGGGCCAGGT GGTCGGCATG GAAGCGCTTG TGCGCTGGCA CGATCCCGAA
GTGGGTCTGA TTCCGCCGTC GCAGTTCATT CCCGTCGCCG AAGAAAGCGG GCTGATCGGG
CCGTTGTCGG AATGGGTGCT GCGCGAAGCG TGCCGTCAGA ACAAGGCGTG GCAGGACGAA
GGATTGCCGC CCGCACGCGT GTCGGTGAAC CTGTCGGCGC GCCAGTTCCA GCAGCGCGAC
ATCGCGAAGC TCGTGATGCA GGTGCTGGAG GAGACCGGCC TCGATCCGCA ATACCTGGAG
CTCGAACTGA CCGAGAGCAC CATCATGCGC AATGCGGAAG AAGCCGTGTC GATGCTCAAC
GAACTGCACG CGCTTGGCAT CGGCCTCGCA ATCGATGACT TCGGCACGGG CTATTCGAGC
CTGAGCTACC TGAAGCGCTT CCCGGTGGAC CGCTTGAAGA TCGACAGATC GTTCGTGTCG
GATATCGGCG AATCGTCGGA TGACGAGACA ATCACGTCCG CGATCATCGC GCTCGCGCAC
TCGCTGAATC TGCAGGTGAT CGCCGAAGGC GTGGAGACGT CGACACAGCT CGACTTTCTC
AAGGAGCGCG CATGCGACGA AATGCAAGGC TATTTCTTCG CGAAGCCGCT GCCGCACCAC
GCGATTCCCG GCATGCTGCA GCGTGGCTCG CAGAGCCCGG CAATGGAGAC GGCGGACGTG
TGA
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| Protein sequence | MISFLSKRLL INLAVVAAAV GANAFVAYTQ ICGQRDADAR TARSTAIRQN LEAYRSTLED
GLDVLGRYEA SAQPAPANTV GSMSASLAQI DRSLHKQLAD QPGVGGALDA LTVSGNRLQQ
DIAAALAKTT APEQDGSRAW AAQTYTRLGM EVDRLEAHME QLRAQEDRAL KAALDASMRD
SRYAMLFLVV TMLAGSGLLI YTFGARENVA REKLRVARTL HRSDERFRGL FEQHPVPMYI
FDRDTLRFLA VNAAAVQQYG YSESEFLAMT VRAIRPHSEV ARLETHLQRS DVTPGGPRTM
AGVWHHRRKD GSQISADISY HAMTFMGRPA LFVLADDVTE QINAEAEAQR SNQMLETVID
NIPQRIFWKD KELRYLGCNM AFARDAGLAY PEQVIGKRDE DMPWRAFAEA LGRQDTDVML
SGVPKMNYET DLVIDGVHRT TVTSKLPFTD SDGRVIGVLG SYTDITERKR ADLALRLQSR
ALDASVNAIL ITEPSKEGNL IEYVNPAFKR ITGYDPQEVI GQDCRLLQRD DRDQEGIAAI
RQALAANREV SAVLRNYRKD GALFWNQLYI APVPDADGQT THHIAVINDV TALIRYQEQL
EYQANYDSLT RLPNRNLLRD RLQHALIVAQ RHHKGVAVVF IDLDGFKNVN DSLGHSVGDR
LLSVVADRLA RCARASDTVA RHGGDEFVIV MTDTVDEQSL IAWMERVRAS ISEPVWLDGT
ELYVGCSMGA SLFPQDGDDA ETLMKKADLA MYRAKDMGRN TFQFYQPEMN VSAGARLNLE
RRLRRALRDN EFLLHYQPQV DIETGQVVGM EALVRWHDPE VGLIPPSQFI PVAEESGLIG
PLSEWVLREA CRQNKAWQDE GLPPARVSVN LSARQFQQRD IAKLVMQVLE ETGLDPQYLE
LELTESTIMR NAEEAVSMLN ELHALGIGLA IDDFGTGYSS LSYLKRFPVD RLKIDRSFVS
DIGESSDDET ITSAIIALAH SLNLQVIAEG VETSTQLDFL KERACDEMQG YFFAKPLPHH
AIPGMLQRGS QSPAMETADV
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