Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_0326 |
Symbol | |
ID | 6241828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | - |
Start bp | 367463 |
End bp | 368980 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642592090 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001856565 |
Protein GI | 186475095 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.35647 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAGCCA GCCTCCAACT CCGCCTGTCG CAGCATCTTG CGCTGACACC ACAACTGCAA CAGTCCATCC GGCTGCTGCA GCTGTCTACG CTCGAACTGC AACAGGAAGT CTCGATGGCG ATCGCCCAGA ATCCGCTGCT CGAAGCGGAG GACGATTGGA TCGCGAGCCC GTTGCGCGTC GCCGCTGACG GCACCGTGAT CGCGCAAACA GCGCAGAATG CCGCGCCGGA GGAAATGTCC GGCGCGCCGC CGTCTTCGGC GTCCACGTCT TCGAGCGAAA GCTCGGATAA CGCCGAGCCG CAGGGCGTCG ACGAGTACAA CGGGCTGGGT TCGGACGCGA ATGGCGATTC GAGCCAGTGG AATCTCGACG ACTACGGCCG TTCGGGCAAC GCATCGGACG ACGACGATCT GCCGCCGCTG CAAATCCACG AATCGACCAC CACGCTGCGC GATCACCTGA CTGCTCAACT TCGCGTGACG CAGGCCAGCC CGCGCGACCG CGCGCTCGTC ACGTTCCTGA TCGAATCGCT CGACGACGAC GGCTATCTGA CGGCCACGTT CGACGAAATA CTGGCCGACC TGCCCGAAGA GCTCGAAGTC GATACCGACG AACTGAACGC AGCACTCGCA TTGCTGCATA GCTTCGATCC CGCGGGCGTC GGCGCGCGCT CGGCGTCCGA ATGCCTGCGG CTGCAGCTGT GCCGGCTCGA TCCGTCGCCC ACGCGCACGC TCGCACTCGA CATCGTCGCA CATCACCTCG AACTGCTCGC CGCACGCGAC TTCACGCGTC TGCGCAAGTA CCTGAAGGCC AGCGACGACG ATCTGCGCGA CGCCCACGCA TTGATCCGCT CGCTCGAACC TTTCCCGGGC GCAGCATACG GCAAGGCCGA AGCCGACTAC GTCGTGCCCG ACATCATGGT GCGCAGAACG GCACAGGGGT GGCAGGCAGA ACTGAATCCG GAAGTCGTAC CGAAGCTGCG TATCAACCAT CTGTACGCGA ATATCCTGCG CAACAATCGC GGCGATCCGG GCAGCGGTTC GCTGCGGCAG CAACTGCAGG AAGCACGCTG GTTGATCAAG AACATCCAGC AACGCTTCGA AACGATTCTG CGCGTGGCAC AGGCTATTGT GGAGCGTCAA AAGAACTTTT TCGCCCACGG CGAAATTGCC ATGCGCCCCT TGGTTTTGCG GGAAATAGCT GATACGCTGG GTTTACACGA GTCGACGGTC TCGCGTGTGA CAACCGGCAA GTACATGCTC ACCCCATTCG GGACGCTTGA ATTTAAGTAC TTCTTCGGAT CGCACGTGTC TACCGACACG GGGGGCGCGG CCTCTTCCAC GGCCATTCGC GCACTCATCA AGCAACTGAT AGGAGCAGAA GACACCAAAT CTCCTCTTTC AGACAGCCGC ATTGCCGAAC TGCTGGCGGA ACAGGGTTTC GTCGTCGCGC GCCGTACTGT TGCGAAATAC CGCGAAGCAC TGAAGATCCC GGCAGTCAAT CTGCGCAAGT CTCTGTAG
|
Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVSMA IAQNPLLEAE DDWIASPLRV AADGTVIAQT AQNAAPEEMS GAPPSSASTS SSESSDNAEP QGVDEYNGLG SDANGDSSQW NLDDYGRSGN ASDDDDLPPL QIHESTTTLR DHLTAQLRVT QASPRDRALV TFLIESLDDD GYLTATFDEI LADLPEELEV DTDELNAALA LLHSFDPAGV GARSASECLR LQLCRLDPSP TRTLALDIVA HHLELLAARD FTRLRKYLKA SDDDLRDAHA LIRSLEPFPG AAYGKAEADY VVPDIMVRRT AQGWQAELNP EVVPKLRINH LYANILRNNR GDPGSGSLRQ QLQEARWLIK NIQQRFETIL RVAQAIVERQ KNFFAHGEIA MRPLVLREIA DTLGLHESTV SRVTTGKYML TPFGTLEFKY FFGSHVSTDT GGAASSTAIR ALIKQLIGAE DTKSPLSDSR IAELLAEQGF VVARRTVAKY REALKIPAVN LRKSL
|
| |