Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_0076 |
Symbol | dapF |
ID | 6241580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | - |
Start bp | 86034 |
End bp | 86894 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642591839 |
Product | diaminopimelate epimerase |
Protein accession | YP_001856317 |
Protein GI | 186474847 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTGA AATTCACCAA AATGCACGGC GCGGGCAATG ACTTCGTCGT GCTCGATGGC TACACGCAAC CGCTCAACCT GACGGAAACC CAGGTGCGCG CACTGGCGAA CCGGCATTTC GGCGTCGGCG CGGACCAGTT GCTGGTGGTC GAAAAACCGA CCGTCGATGG CGTCGATTTC AGATACCGCA TTTTCAATTG CGACGGCGGC GAGGTCGAGC ACTGCGGCAA CGGCGCGCGC TGCTTCGTCA AGTTCGTGCG TGACTCGCGC CTCACCGACA AGCGCAGCGT CCGCGTGCAG GTTCAGAAAG GCGTGATCAC GCTGACCATG CAGGACAACG GCGAGGTCGT CGTCGATATG GGCGCGCCCG TGTTCGAGCC GGTCCAGGTG CCGTTCGACG CAAGCGGTGT CGAAGCGCGC CGCGAAGGCA ACGACACGCT GTATGCGCTA GAGGTCAACG GCGAAACGCG CTGGGTTTCC GTCGTGTCGA TGGGGAATCC GCATGCGGTG CAGGTGGTGG ATGATGTCGA GGCGTTTCCC GTGCTGGTCG ACGGGCCCGT CATCGAGACA CACCCGCGCT TTCCGCAGCG GGTCAATGCC GGCTTCATGC AGATCGTCGG ACGCAGCGAG GTGAAGCTGC GCGTCTACGA ACGCGGCGCG GGCGAAACAC TCGCGTGCGG CACGGGCGCA TGCGCGGCCG TGGCCGCGGG CATTCGCCGC GGCCTGCTGG ATGCCCCCGT CAAGGTTCAC ACGCACGGCG GCACGCTGAC CATCACGTGG AACGGCGAGT CCGCATCGTC GTTGATGATG GCGGGGCCGG CCGCTACCGT GTTCGAAGGC GAAATCGAAC TGGCCGACTG A
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Protein sequence | MKLKFTKMHG AGNDFVVLDG YTQPLNLTET QVRALANRHF GVGADQLLVV EKPTVDGVDF RYRIFNCDGG EVEHCGNGAR CFVKFVRDSR LTDKRSVRVQ VQKGVITLTM QDNGEVVVDM GAPVFEPVQV PFDASGVEAR REGNDTLYAL EVNGETRWVS VVSMGNPHAV QVVDDVEAFP VLVDGPVIET HPRFPQRVNA GFMQIVGRSE VKLRVYERGA GETLACGTGA CAAVAAGIRR GLLDAPVKVH THGGTLTITW NGESASSLMM AGPAATVFEG EIELAD
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