| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3416 |
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| Symbol | |
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| ID | 6199004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010581 |
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| Strand | - |
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| Start bp | 3875299 |
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| End bp | 3877674 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641707363 |
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| Product | ribonuclease R |
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| Protein accession | YP_001834462 |
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| Protein GI | 182680316 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.076864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.337145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGAAAA CAGCTGTGCC TCCCTCTTAT ACCGCCTCCG ATGCGGAGAC CTCGCCGGGC
GCGGGACGCC TGCCGTCGCG CGCCGATCTT ATCGCCTTTA TCGCGCGTGA GCGCGAAGCG
CAGGGCGATA AAGTACCGGC CAAGATTGGC AAACGGGAAA TCGCCCGTGC CTTCGATATC
AAGGGGGATG ATCGCATCGC CCTGAAGCGA ATGTTGCGAG AACTCGAAGC GGAGGGCGCG
ATCGAGCGGC GACGCCGCGT GCTGCACCAG CCGGGACGCC TGCCCGCGGT GGTTCTCGCC
GAGATCTTTT CCCGCGACCG CGATGGTGAT CTTCTGGCAA GCCCGGTCGA ATGGGATGCC
TCGCTCGGCC CAATACCCAA AATCGCTATA TCGGCGCCGC GCAAGCCGCG CGCCAATATG
CCAGCTCCAG GTCTTGGCGA TCGCGCCCTG GTGCGGGTCG AGGCGGTTCC TGATCCAGCA
CCCCATGAGC CTACCTATAC CGGCCGCCTG ATCAAGCTTC TGCCACGCGC CAGAACACAA
GTGCTCGGCC TCTTCCGAGC CGATCCGCTG GGCGGTGGTG GCCGTATCGT GCCGATTGAT
AAAAAGAGTC TCGGCCGGGG CGAATTACAG GTTTCCGAGG CCGATCGCGG TGAGGCGGAG
GATGGTGATC TCGTTGCCGT CGAGCCGCTG CGCTCGGGCC GTCTTGGCTT GCCGAGCGCG
CGCGTGCGCG AAAGAATCGG CGCCTTTTCC TCGGAAAAAG CGGTGAGCCT GATCGCTATT
CACGCGCATG GCCTGCCGCA TATTTTCCCG TCCGAAGTGC TGGCGGAAGC CGAAAGCAAA
AAGAATGTTG GCCTTGCAGG GCGCGAGGAT TGGCGCGAAC TGCCGTTGGT GACCATCGAT
CCTCCAGATG CCAAGGATCA TGACGACGCC GTTTATGCTG ACTATGATCC TGATCCCGCC
AATGTGGGCG GCACGATTTT GAGTGTCGCC ATCGCCGATG TCGCCGCTTA TGTCCGCCTT
GGCGGGGCGC TTGACAAGGA AGCGCAGGAG CGCGGCAATT CGGTCTATTT TCCCGATCGC
GTCGTTCCCA TGTTGCCCGA GCGGATTTCC AACGATCTGT GTTCGTTGCG TCCCGGCGAG
GATCGGCCAG CGCTCGCCGT GCGCATGGTC ATCGCCGCCG ATGGGCACAA GCTTAGCCAC
ACCTTTCATC GCGTAATAAT GCGCTCGGCG GCGAAATTGT CTTATGCGCA GGCGCAGGCC
GCGATCGATG GCGCGCCTGA TGATGTGACA GAGCCTTTGC TCGAAACGGT CTTGCGGCCT
CTGTATGCGG CGCATGAATG TTTGAAAAAG GCACGCGCCA AGCGAGGGCC ACTCGATCTC
GATCTGCCGG AACGCAAGAT CAAACTCGAT GAGGCTGGTC GCGTCGAACG GATTTTTACC
CCCGCCCGGC TCGATGCGCA TAAATTGATC GAGGAATTCA TGATCCTCGC CAATGTATGC
GCGGCGGAAA CGCTGGAGGC GCATCATCAG CCTTTGATCT ATCGCACACA TGACGAGCCG
ACGATCGAAA AGCTCAACGC GCTCGCCGAA TTTCTGCATA CGATCGATAT CAAGCTCGCC
AAGGGCCAGG TGCTGCGGCC GGCGCAATTC AATGGTATTC TGGCGCAGGT GCGCGAAACC
GAGCACGAAC ATCTCGTCAA CGAGATCGTG TTGCGCACGC AGGCCCAGGC GGAATATGTT
ACTGAAAATT ACGGGCATTT CGGTCTCAAT CTGCGCCGTT ACGCGCATTT CACCTCGCCG
ATTCGCCGCT ATGCCGATCT CATCGTGCAT CGCGCCCTGA TCAGCGCCCT GAAATTCGGC
TCCGATGGCT TGCCGAATAC GGATCCGCAT GTTCTTGCCG AAATCGCGGC CAAGATTTCA
GCGGCTGAAC GCCGTGCCAT GGCCGCCGAG CGCGAGACCG TGGAACGGCT GATCGCCATT
CACCTCGCTG ATCAAGTCGG CGCGCAATTC GAGGGCCGCA TTTCCGGCGT CACCAAATCC
GGCCTGTTCA TCCGCCTCAT GGACTCAGGG GCCGATGGTT TCGTGCCCAT ATCGAGCCTT
GCTCAGGATT ATTTCCGGCA TGATGAAGCA AGGCACGCCT TGATCGGGTC GCGCACCGGC
CTCATGCATC GGCTGGGTGA TCTCGTCACC GTCCGGCTCG TCGAGGCAGC GCCGCTGGCA
GGCGCGCTGC GTTTCGAACT CATCGACGGC GGCGCTCTTG CGCCACGCTC GAAAGGCCGG
AATGGGTCCG CCAAGGGATC TGCGAAGCGC AGCTTCGACC CCAAAGCGGA AGAGGCTTTA
GCCAAGAAAA ACATCAAACG CAGCCGCCGG CGCTGA
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| Protein sequence | MRKTAVPPSY TASDAETSPG AGRLPSRADL IAFIAREREA QGDKVPAKIG KREIARAFDI
KGDDRIALKR MLRELEAEGA IERRRRVLHQ PGRLPAVVLA EIFSRDRDGD LLASPVEWDA
SLGPIPKIAI SAPRKPRANM PAPGLGDRAL VRVEAVPDPA PHEPTYTGRL IKLLPRARTQ
VLGLFRADPL GGGGRIVPID KKSLGRGELQ VSEADRGEAE DGDLVAVEPL RSGRLGLPSA
RVRERIGAFS SEKAVSLIAI HAHGLPHIFP SEVLAEAESK KNVGLAGRED WRELPLVTID
PPDAKDHDDA VYADYDPDPA NVGGTILSVA IADVAAYVRL GGALDKEAQE RGNSVYFPDR
VVPMLPERIS NDLCSLRPGE DRPALAVRMV IAADGHKLSH TFHRVIMRSA AKLSYAQAQA
AIDGAPDDVT EPLLETVLRP LYAAHECLKK ARAKRGPLDL DLPERKIKLD EAGRVERIFT
PARLDAHKLI EEFMILANVC AAETLEAHHQ PLIYRTHDEP TIEKLNALAE FLHTIDIKLA
KGQVLRPAQF NGILAQVRET EHEHLVNEIV LRTQAQAEYV TENYGHFGLN LRRYAHFTSP
IRRYADLIVH RALISALKFG SDGLPNTDPH VLAEIAAKIS AAERRAMAAE RETVERLIAI
HLADQVGAQF EGRISGVTKS GLFIRLMDSG ADGFVPISSL AQDYFRHDEA RHALIGSRTG
LMHRLGDLVT VRLVEAAPLA GALRFELIDG GALAPRSKGR NGSAKGSAKR SFDPKAEEAL
AKKNIKRSRR R
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