| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3385 |
|---|
| Symbol | |
|---|
| ID | 6201688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 3839569 |
|---|
| End bp | 3841413 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641707332 |
|---|
| Product | glycoside hydrolase 15-related |
|---|
| Protein accession | YP_001834431 |
|---|
| Protein GI | 182680285 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.371631 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTGA AGATCGAAGA TTATGCGTTG ATCGGCGATT GTGAGACGGC GGCGCTCGTC
GGGCGTGATG GTTCGATCGA TTGGCTATGC TGGCCGCGTT TTGATTCCGG CGCCTGTTTC
GCCCAATTGC TCGGTGGTCC GGACAATGGA CGCTGGCTCA TCGCGCCGGG CGATCCTTCG
GCCAGGATCA GCCGGCATTA TCGCGATGGC ACCTTGATCC TGGAAACCCT CATTGAAACG
GATGAGGGAG CGGCGATCGT CATTGATTGC ATGCCGTTGA AAATTCGCGG CTCGCATGTT
GTGCGCATCG TGCGTGGTCT ACGCGGCACG GTAAAATTCA AGACAGAATG GATCGTTCGT
TTCGAATATG GATCAATCGT GCCCTTGATC CGGCGGCATG AGGATGGCGG ATTGCATGCG
GTCGCGGGAC CCGATCGGGT AATCTTGCGC ACACCTGTCA TGCTGGAACC GCAAGGGGCC
GATCCGAGAG CGACCTATGG CGCTGAGTTT GACGTCGTCG CGGGCGAGAG CGTGGATTTC
ACTTTGAGCC ATGTCTTGTC CTATGCCGAT GTGCTGCGCC CAATCGATCC CGAAAAAGCT
TTGGAACAGA CGGATCGAAC CTGGACCGCC TGGACTGGCC TTGGAAACTG GGGGAAGGGC
ACGCGCGGGC AGGAAGTCTG GACGCCGACG ATCCAACGTT CCCTCGTGAC CTTGCGGGGC
CTGATTTTCC AACGCTCTGG TGCAATCATC GCGGCGCCGA CAACTTCATT GCCGGAGCAA
TTGGGTGGGA CCCGCAATTG GGATTATCGG TTTTGTTGGC TCCGCGATGC GACCTTCACT
TTGCTCGCCT TGATGAATAC CGGATACACG AATGAAGCCG TCAAATGGCG AAGCTGGCTG
GTGCGGGCAC TCGGGGGTGA ACCATCGCAG GTCCGTATCC TTTACAGCGT CGGCGGTGAA
CGTCATCAGC CCGAATCCAT CCTTCCCTGG CTCGCGGGCT ATGAAGGCGC GCAACCGGTG
CGCATCGGCA ATGGAGCGGC TGGTCAATTG CAGCTCGATC TCTATGGCGA AGTGCTCGAT
GCGCTCTACC AGAGCCGGCG GCACGGTTTG GTGCAGGATG ATGTTGATTG GCCGTTGCAA
TGCGCCTTGC TCACGCATCT GGAAACGATC TGGCGGGAGC CTGATGACGG GATTTGGGAA
GTCCGCGGTG GTCGCCAACA TTTCACTTAT TCCAAGGTGA TGTGCTGGGT GGCTTTCGAC
CGAGGCGTCA AGAGCATCGA ACAATTCGGT CTGCCGGGGC CTCTCGATCA TTGGCGCGAT
TTGCGTGCGA TGATCCATGC GGAAATTTGC GAGAAGGCTT ATGACGCGGA GATCGGTGCC
TTTACCCAAA GCTATGGATC GAAACTACTC GACGCTAGTA CTTTGCTTCT CGGGCTCGTC
GGCTTTCTGG CCGTGGATGA TCCACGCTTG CGCGGCACAG TCACAGCGAT TGAACGCGAT
TTGCTGCGCG ATGGATTGGT ATGCCGGTAT AACACAAACG AAACCCTTGA CGGCTTACCG
CCCGGAGAGG GTGTTTTTCT CGCCTGTAGC TTCTGGCTTG TCGATAATTT CATCCTGCTC
GGACGGATCG ATGAGGCAAA GGCTTTGTTC GAGCGGCTTC TCAGCCTTGC CAATGATCTC
AGCCTCCTAT CCGAGGAATA TGACACGACA ACGCACCGGC TCGTTGGCAA TTTTCCGCAA
GCCTTCTCGC ATATTGCCCT GGTCAATTCT GCCTGCAATC TGGCGCATGT GGCAAAACCC
CTGGAACAGC GTACCGGTTG TTCGATGCAG AGCAGGATGC TGTGA
|
|---|
| Protein sequence | MSLKIEDYAL IGDCETAALV GRDGSIDWLC WPRFDSGACF AQLLGGPDNG RWLIAPGDPS
ARISRHYRDG TLILETLIET DEGAAIVIDC MPLKIRGSHV VRIVRGLRGT VKFKTEWIVR
FEYGSIVPLI RRHEDGGLHA VAGPDRVILR TPVMLEPQGA DPRATYGAEF DVVAGESVDF
TLSHVLSYAD VLRPIDPEKA LEQTDRTWTA WTGLGNWGKG TRGQEVWTPT IQRSLVTLRG
LIFQRSGAII AAPTTSLPEQ LGGTRNWDYR FCWLRDATFT LLALMNTGYT NEAVKWRSWL
VRALGGEPSQ VRILYSVGGE RHQPESILPW LAGYEGAQPV RIGNGAAGQL QLDLYGEVLD
ALYQSRRHGL VQDDVDWPLQ CALLTHLETI WREPDDGIWE VRGGRQHFTY SKVMCWVAFD
RGVKSIEQFG LPGPLDHWRD LRAMIHAEIC EKAYDAEIGA FTQSYGSKLL DASTLLLGLV
GFLAVDDPRL RGTVTAIERD LLRDGLVCRY NTNETLDGLP PGEGVFLACS FWLVDNFILL
GRIDEAKALF ERLLSLANDL SLLSEEYDTT THRLVGNFPQ AFSHIALVNS ACNLAHVAKP
LEQRTGCSMQ SRML
|
|---|
| |