| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3331 |
|---|
| Symbol | |
|---|
| ID | 6201546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 3788582 |
|---|
| End bp | 3789388 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641707279 |
|---|
| Product | pyrimidine 5'-nucleotidase |
|---|
| Protein accession | YP_001834379 |
|---|
| Protein GI | 182680233 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.142582 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCAAA CGACGAAAAA TTCTCCTCCC TCTCCGCTGG GTTCCCTTGC GCGAAAAACT
CCGCCGTTTG CGGCGGAGAA TCAGGCTTCC TTGCCGTCGC ACCAGAATCG GGTCCTGGCC
CATGTGGAGA CTTTCGTCTT CGATCTCGAT AATACGCTCT ACCCGTCCCA TTGCGATCTC
TGGCCCAAGA TCGATGCACG CATCACCCTT TATATGATGC ATCACCTGGG GCTCGACGGC
CTGTCCTCCC GCGCCTTGCA GAAACATTAT TATCACCATT ACGGCACGAC CTTGCGCGGA
CTGATGCAGG AAGATGCAGT CGGTGCAGAA GACTTTCTAG CTTTCGTCCA TGACATAGAC
CGCAGCTCGC TGCCGCCCAA TCCGACACTC GCCGACGCCA TTACCCGTTT GCCGGGCCGC
AAGCTGATTC TGACCAATGG CTCGCGCGAT CATGCGCTCA ATACGGCCAA GGCCCTCGGA
CTCGAGGCCT TGTTCGAGGA TGTTTTCGAT ATTGCCGACG CCGACTTCGT CCCCAAGCCG
CATCCCACGG CCTATGAACG GTTCTTCGAC AAGCATGCCG TCGATCCAGC GCGTGCCGTC
ATGTTTGAGG ATCTGACGAA AAACCTGCTC ATTCCGCATC AGCGCGGCAT GAAGACCGTG
CTCGTCGTGC CGAAGCCCGG CCAATTGGAC CATCGCGACA AGATCGAGAT CGCCGGTCGC
GAGATCCCGC CGCATATCGA CTATGTCACC GATGACCTCG AAAGCTTTCT GCTCGGGCTT
CTTGAGGACG CCACGAACAA GCCGTGA
|
|---|
| Protein sequence | MTQTTKNSPP SPLGSLARKT PPFAAENQAS LPSHQNRVLA HVETFVFDLD NTLYPSHCDL
WPKIDARITL YMMHHLGLDG LSSRALQKHY YHHYGTTLRG LMQEDAVGAE DFLAFVHDID
RSSLPPNPTL ADAITRLPGR KLILTNGSRD HALNTAKALG LEALFEDVFD IADADFVPKP
HPTAYERFFD KHAVDPARAV MFEDLTKNLL IPHQRGMKTV LVVPKPGQLD HRDKIEIAGR
EIPPHIDYVT DDLESFLLGL LEDATNKP
|
|---|
| |