| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_3065 |
|---|
| Symbol | |
|---|
| ID | 6198159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 3496542 |
|---|
| End bp | 3498746 |
|---|
| Gene Length | 2205 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641707013 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001834116 |
|---|
| Protein GI | 182679970 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0065343 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGA ATCTTAATTC ACTCCTGCAC TCACACCCTT CTCGATTCGG CGTGGGGCCT
CAACAGCAAA TCTTGCTGCA AGCAATGACT CCCCCCATCC AGATCCGTCG CGGTCGTAAA
CATCATGCAA AAGGTGTCGA ATACGCTCGC GAAAACCGAT GGAGACAAGC CCTCCATGAA
TTCGAAGAGG CAGCGCGCCG AGCACCACAT GAACCGAATT TTCATTATTC GCACGGGGTC
GCATTATGTC ACTTCAACCG GTTTGCCGAA GCCATCAAAG CCTTTGAGCG TGAGCTTGCA
GTCATACCTG AGCATGGATC AGCGCTGACT GAATTGGGTG CCTGTTTTGC ACGAATAGGT
CGCACCCGGG AAGGCATTTC CTATCTACGG AAAGGCCTCA AACTGATGCC TTATCTGCCA
CAGGCTCAAT TTAATCTCGG ACTCGCTCTG CTGACCGAAA GCCGCCGCCA AGAGGCGATC
GAGGCATGTG ACCGGGCGAT CGAACTTGAT GCGAACTATG CGGATGTCTA TCGGCTGCGC
GGCCTAGCCT ATGCGATGAG TGATGAGGAC GAGAAGTCCT TTCATGACCT GCGTATAGCG
GCCGTTCTCG ACAACAAAAA TTACGACATT CTAGTAAAAC TCGGCACGCA GAATAGCGAA
AAATCGAATC TGCCACAAGC GAGTCGCCTC CTTGAAGTGG CAGCGAAAGT CGCTCCGAAA
ATGGCTCTGG CGCAATATGC CTGGGGCCAC TTTCTCATCG GTCATCGTAT GTACGAACTT
GGATTAAGTT TCGTCGACCG TGCTATCGAA TTAGATCCGT TGCAATGGGC ACCGTATCTT
GCACGCGCCT TGGGCTTTCT GGGGCAAGGC CGTATCGAAG AGGCAATGGG ATGCTATCGC
CGAGCAAGCG AGATAGCACC CGACAATATA GACGTTGCAG GTGCGCCACT TTTTACTTTG
CAGCATAAGC CGGGGGTTAC AGAGGCGGAT TTGTTGCAGG CCCATAAAAA ATGGGGAAAA
CTGGCTCAGC CTCACGCGTC GAAAGATAGA CTGTCTTTTA CGAACAATCC CGACCCACAA
CGGAAACCAC GGATAGGGCT GGTGTCAGGC GACATGCATC GCCATGCCGT GGCCTTCTTG
ACCCTACGGG CATTCGAGCA ACTCGCGACG CTAGGCTATG AGATTTTTTG TTATAAGACG
GACCCAAAGC GCCGTGACGA CGATTTCAGC GAGCGATATA AAGCCTTTGC GAAATCCTGG
CATGATATAT CCGAGCTCAA TGATACCGAA CTTGCCGAGT TGATTGCCGA GCAAGAAATC
GACATACTTT TCGACCTCGC TGGGCACACA AGCGGAAACC GCCTCTCCTT ATTCGCCATG
CGTGCGGCGC CCATCCAGTT GACCTGGGCC GGCTATGTCG GCACGGTTGG GCTCGATACT
TACGATGGCA TTATTGCCGA CCCGGTTGAA ATTCCGCTTG AGCATGATTC GTTCTATCTG
GAACCGGTCA TCCGTTTACC TGATTGCTAT GTTTGCTATC ATCCACCGAC TCAAGAGGTT
GATGTCGGTC CGCTCCCCTA TACTAAGACA GGAACTTTCA CGTTCAGCTG TTTCAACCGC
CCCGCGAAAC TCAATAGTGA AGTGGCTCGG GCTTGGTCCA AGATCCTGGA ACAAGTGCCA
AACGCACGTA TTCTGATGGT CTATGGCGGT TTGGGCGAGG CGAGCACACA GGAAGCCATC
TATAAAGTCC TTGAAAGCGG GGGGCTTGCA CGTGAACGCG TGGAACTTGT TGGCGAAACC
AATCAATTGA AACTTCTTGA GGCTTATGCC GAGAGAGTTG ATCTCGCGCT TGATCCCTTC
CCCTATTCAG GAGGGGTCAC GACACTCGAA GCCATGTGGA TGGGTGTCCC GACGATTACA
TGCGTCGGCG ATACTTTTGC TGGACGTCAT TCCGCGTCAC ATCTGACCGC GGCAGGGCTT
GCGGATTTCT GCACCCCTAC CGTGGAAGCC TATATTAATT TGGCCGTGGA ATGGACCAAA
CGGCCACACG AACTGGCCGC CTTGCGCGCC AGCCTGCGCG ATAAAGTCGC TGCATCGCCC
TTAAATAATC ATGTTCTCTT TGGTCATCAT CTTGATGAAG CATTAACACA ACTATGGAGA
GAATGGTGCA TGGTGCGCAT TGCGAAATCA GATCTTGAAA TCTGA
|
|---|
| Protein sequence | MAENLNSLLH SHPSRFGVGP QQQILLQAMT PPIQIRRGRK HHAKGVEYAR ENRWRQALHE
FEEAARRAPH EPNFHYSHGV ALCHFNRFAE AIKAFERELA VIPEHGSALT ELGACFARIG
RTREGISYLR KGLKLMPYLP QAQFNLGLAL LTESRRQEAI EACDRAIELD ANYADVYRLR
GLAYAMSDED EKSFHDLRIA AVLDNKNYDI LVKLGTQNSE KSNLPQASRL LEVAAKVAPK
MALAQYAWGH FLIGHRMYEL GLSFVDRAIE LDPLQWAPYL ARALGFLGQG RIEEAMGCYR
RASEIAPDNI DVAGAPLFTL QHKPGVTEAD LLQAHKKWGK LAQPHASKDR LSFTNNPDPQ
RKPRIGLVSG DMHRHAVAFL TLRAFEQLAT LGYEIFCYKT DPKRRDDDFS ERYKAFAKSW
HDISELNDTE LAELIAEQEI DILFDLAGHT SGNRLSLFAM RAAPIQLTWA GYVGTVGLDT
YDGIIADPVE IPLEHDSFYL EPVIRLPDCY VCYHPPTQEV DVGPLPYTKT GTFTFSCFNR
PAKLNSEVAR AWSKILEQVP NARILMVYGG LGEASTQEAI YKVLESGGLA RERVELVGET
NQLKLLEAYA ERVDLALDPF PYSGGVTTLE AMWMGVPTIT CVGDTFAGRH SASHLTAAGL
ADFCTPTVEA YINLAVEWTK RPHELAALRA SLRDKVAASP LNNHVLFGHH LDEALTQLWR
EWCMVRIAKS DLEI
|
|---|
| |