Gene Bind_1960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBind_1960 
Symbol 
ID6199147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeijerinckia indica subsp. indica ATCC 9039 
KingdomBacteria 
Replicon accessionNC_010581 
Strand
Start bp2235148 
End bp2236365 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content54% 
IMG OID641705948 
Productpolyhydroxyalkanoate depolymerase, intracellular 
Protein accessionYP_001833072 
Protein GI182678926 
COG category[I] Lipid transport and metabolism 
COG ID[COG4553] Poly-beta-hydroxyalkanoate depolymerase 
TIGRFAM ID[TIGR01849] polyhydroxyalkanoate depolymerase, intracellular 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.258028 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTACC AAACATATGA AGTGCAGGAG AACCTGCTCG ACCTGCTCAG GCCATTGGCT 
GCCACGGCAG GAAAGACACT GCGATCGCCA TACCCTGGGC TTGGGCAGGT TTGGCCAGCC
AGTGAAATCG TCGGCATTTT AGAGACTTTC GCCAATCTTT CTGTGACGCA TGTGCGCCGC
CCTTTTGCCA TCAACTCGGT TCTTGTGGGT GATCGCCGGG TCCCGGTGAC GGAAGAAATC
GTCGCTTCGA CACCCTTTGC CACCCTCCTT CATTTCAAGA AGGAAACCAA CCTGCACCAG
CAACGCGTTT TGGTGGTCGC CCCCATGTCA GGTCATTTTG CGACCCTGCT GCGCGCGATG
ATCGAGACCG TTTTAGCTGA CCATGACGTC TATATCACGG ATTGGCACAA TGCACGCGAC
GTCCCGCTGA GTGCGGGCAG ATTCGATCTC AGCACCTTTG TCGACCATGT AATCGATTTC
CTGCGCATGA TGGGGGCGAG ATCGCATGTC ATCGCGGTAT GCCAACCATG CGTCCCCGTG
CTCGCCGCAG CTGCCCTCAT GAACGAAGAC AAGGACGACG CACAGCCTTC CAGCATGACC
TTGATGGCTG GACCGATCGA CACGCGCATC AATCCGACCA AGGTCAACGC ACTCGCGACC
CAGCATCCAA TCGCCTGGTT CGAGCAGCAC CTGACGGATA AGGTGCCGCT CTGTTACAAG
GGCGCACGAC GGGATGTCTA TCCGGGCTTT CTACAACTCA CGGCCTTTAT GAGCATGAAT
TGGGACCGCC ATCTTCGCGC CTTCAAGGAT ATGGCGGAGG CGCGGGTGGC CAATGATCTG
CCAAGACTTC AAGCCATTCA AACATTTTAT GATGAATATT TGACCGTTAT GGACTTGCCG
GCCGAACTCT ATTTGCAAAC CATTCAATTG ATTTTTCAGG ATCACGCTTT ACCACGTGGC
AAGCTCACGG TGCATGGCCG TCCAATCAAT CCCAAAGCTA TCAAACATAC CGCGCTCATG
ACCGTTGAGG GTGAGCGAGA CGATATTTGC GGCCTCGGCC AAACGCTTGC TGCCCAGGAG
CTTTGCTCGG GATTGAAACC CTATATGAAG TTCCATCATG TGCAGATGGG CGTTGGTCAT
TATGGCGTCT TCGCCGGGCG ACGCTGGAGC ACTGAAATTT ATCCCAGAGT GCGTTACACC
ATTCAAATGA CAAGCTGA
 
Protein sequence
MIYQTYEVQE NLLDLLRPLA ATAGKTLRSP YPGLGQVWPA SEIVGILETF ANLSVTHVRR 
PFAINSVLVG DRRVPVTEEI VASTPFATLL HFKKETNLHQ QRVLVVAPMS GHFATLLRAM
IETVLADHDV YITDWHNARD VPLSAGRFDL STFVDHVIDF LRMMGARSHV IAVCQPCVPV
LAAAALMNED KDDAQPSSMT LMAGPIDTRI NPTKVNALAT QHPIAWFEQH LTDKVPLCYK
GARRDVYPGF LQLTAFMSMN WDRHLRAFKD MAEARVANDL PRLQAIQTFY DEYLTVMDLP
AELYLQTIQL IFQDHALPRG KLTVHGRPIN PKAIKHTALM TVEGERDDIC GLGQTLAAQE
LCSGLKPYMK FHHVQMGVGH YGVFAGRRWS TEIYPRVRYT IQMTS