Gene Bind_1945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBind_1945 
Symbol 
ID6200763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeijerinckia indica subsp. indica ATCC 9039 
KingdomBacteria 
Replicon accessionNC_010581 
Strand
Start bp2215119 
End bp2217605 
Gene Length2487 bp 
Protein Length828 aa 
Translation table11 
GC content58% 
IMG OID641705933 
ProductTPR repeat-containing protein 
Protein accessionYP_001833057 
Protein GI182678911 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID[TIGR01905] doubled CXXCH domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGGGCGCA GGCAAGGTCA ATCTTCAACG AGAGCAGCAC GCCGCAGGCG ATCGGTTGTT 
GAGCCGATAT CATCGTCCAA GGAAATACCA CCGCCCAGCG CGGCCGTCGG CGTGCTCACG
AAGCGCATGG TCTGGATCGG CGTGGTCCTG TCCGCTTTGC TCGTTGCGAT CTGCGGCCTC
GCTTTTCAAT ATTTCAAAAG TCCGGGCGGT ACGGATCAGG GCCTCACACC AGGGCTCCTG
ACAGCGCTCA CTTTCGTCGG CAGTGAGACT TGCGCCACCT GCCACCAGAC GGAGGCGCAA
TCCTGGAAGA TGTCGCAGCA CCAACATGCT ATGGCGCATG CGACTGACGC GACAGTGCTC
GGCGATTTCG CCAATGCGAG CTTCGATTAT TTCGGGATAC ATTCGCGCTT CTTTCACAAG
GACGACAAGT TTCTCGTCGA AACCGATGGG CCTGATGGAA AGCTTGCGAC TTTTGAAGTC
AAATATACCT TCGGCATCGA CCCGCTGCAG CAATATCTCG TGGAATTTCC CGATGGACGG
CTCCAGGCTT TGTCGATCGC GTGGGATACG CGGCCGGAAG AGAAGGGCGG CCAGCGCTGG
TTCCATCTCT ATCCAGACGA AGGGATCCGA CATGACGATG TTCTGCATTG GACCAAGTTG
AATCAGAACT GGAACTTCAT GTGCGCCGAA TGCCATTCGA CAGATGTGCA CAAGAATTAT
GACGCTGTGC ATGATCGCTT TGCCACGCAT TTTGCCGAGA TCAGCGTCGG TTGCGAGGCG
TGCCATGGCC AGGGCTCTCG CCATGTTACC TGGGCGCGAG AAAAGCAAAG CTGGTGGCCG
TTTGCAAAAC AGAATGACCC GACCAAAGGG TTTCTGGTGA GCTTTGACGA GCGAGCTGGC
GTGACGTGGT CACCCGATCC CGCGACTGGT CTACCTCGCC GGAGCGCTGC ACCTGCGACC
TTGCGCAAGG AAGTTGAGAC CTGCGGCCTC TGTCACGCGC GACGCAGCGC ATTTTCTGAA
GACTGGGTGC CTGGCCGATG GCTTTCTGAC ACGCATGGGG TCTCCCTGCT TAGCCGTGGC
CTCTTTGAGG CCGACGGGCA GATGCGTGAT GAGGTTTATA ATTATGGGGC GTTCAAGCAG
AGCAAGATGT TCGCGGCGGG CGTCACATGC AGCGATTGTC ATGAGCCGCA TGGCGCGAAA
CTCCGGATTC CTGGCAACGG CGTCTGCCTG CAATGTCATG CCACTGACCG ATATGAAACC
GTGGCGCATC ATCATCATCA TTATGACGGG GCAACGCCCG CGCTTGCCTG CACATCATGT
CATATGCCAC AGCGAACCTA TATGGTCATC GACCAGCGGC ATGATCACAG TTTCCGAATT
CCGAGACCGG ATCTGTCCGC AAAGCTCGGC ACGCCGAACG CTTGCAATGG TTGTCATACT
GGTAAACCGC CCGAATGGGC AGCGTCGGCG ATCGAGCAAT GGTATGGACC CGACCGCAAA
GGGTTCCAAA ATTATGCTGC TGCTTTCCAT TCCTCATGGA CTGACATGCC GGATGCGGCA
GTCCGGCTTG CTGCCGTCGC CGGAGATCGT GGTGCACCGG CCCTTGCCCG AGCGAGTGCT
TTGACCGAGC TTGGTGGACA CGTCACGCCA TCGAATTTTG TCCTGGCCAG AAATGGCCTC
AGCGATCCAG ATCCGACAGT GCGGATTGCG GCGCTCGATA TGCTGCAAGG CCTGCCCGGA
CTTCAAATCT GGCCTCTCGT TTCAACGCTT CTTTCCGATG AGAGCTTGGG TGTGCGGATA
AGGGCCGCCG CACTGCTGGC CTCGGTGCCG ACGGCGAGCC AGCCGCCTGC CGACCGCGAG
CGTTTCGAGC GCGCTGCTGC TGAATTCATT GCCGCACAGC GTTTGAATGA CGATCGGCCC
GAGGCTCGCA GCATGCTCGC CAGCTTCCTT GTCCAGCGCA ATCGCTTTCC TGAAGCGGAA
ATCGAATATA GGGCTGCTTT GCACCTCAGC GCAGCCTATA CGACGGCAGC AATCAATCTC
GCCGACCTTT ATCGGCATCT TGGGCGCGAA ACTGCAGGAG AGGCGGTGCT GCGGGAAGCC
ATTGCAGCCT CGCCGAAGGA TGCAGGCGTT CATCATGCGC TGGGGCTGAC GCTGGTACGC
CTGAAGCGCC AGAATGAGGC GCTCACCGAG CTTCGTCAGG CGGCGGAACT TGCCCCCGAT
CAAGCCCGAT TTGCCTATGT CTATGCGGTC GCATTGCATG GGATGGATCG CGGCGATGAA
GCGCTCGGCA CTGTCAAGAC AGCTTTGGCG CGGCATCCCA ATGACCATGG ACTTTTGTCA
GCGGCGGTCA CTTTCTCTCG AAACGCCGGA GACATTCCAA TGGCGCTTCG CTATGCCGAG
CAACTTGCGC AATTGTCTCC GGAGGATCGC GATCTCGCCT CTCTCGTTAT GGCATTGAGA
CAGCAGCTCA ACGCGCCCAT AAAATGA
 
Protein sequence
MGRRQGQSST RAARRRRSVV EPISSSKEIP PPSAAVGVLT KRMVWIGVVL SALLVAICGL 
AFQYFKSPGG TDQGLTPGLL TALTFVGSET CATCHQTEAQ SWKMSQHQHA MAHATDATVL
GDFANASFDY FGIHSRFFHK DDKFLVETDG PDGKLATFEV KYTFGIDPLQ QYLVEFPDGR
LQALSIAWDT RPEEKGGQRW FHLYPDEGIR HDDVLHWTKL NQNWNFMCAE CHSTDVHKNY
DAVHDRFATH FAEISVGCEA CHGQGSRHVT WAREKQSWWP FAKQNDPTKG FLVSFDERAG
VTWSPDPATG LPRRSAAPAT LRKEVETCGL CHARRSAFSE DWVPGRWLSD THGVSLLSRG
LFEADGQMRD EVYNYGAFKQ SKMFAAGVTC SDCHEPHGAK LRIPGNGVCL QCHATDRYET
VAHHHHHYDG ATPALACTSC HMPQRTYMVI DQRHDHSFRI PRPDLSAKLG TPNACNGCHT
GKPPEWAASA IEQWYGPDRK GFQNYAAAFH SSWTDMPDAA VRLAAVAGDR GAPALARASA
LTELGGHVTP SNFVLARNGL SDPDPTVRIA ALDMLQGLPG LQIWPLVSTL LSDESLGVRI
RAAALLASVP TASQPPADRE RFERAAAEFI AAQRLNDDRP EARSMLASFL VQRNRFPEAE
IEYRAALHLS AAYTTAAINL ADLYRHLGRE TAGEAVLREA IAASPKDAGV HHALGLTLVR
LKRQNEALTE LRQAAELAPD QARFAYVYAV ALHGMDRGDE ALGTVKTALA RHPNDHGLLS
AAVTFSRNAG DIPMALRYAE QLAQLSPEDR DLASLVMALR QQLNAPIK