| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1587 |
|---|
| Symbol | |
|---|
| ID | 6200454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 1788396 |
|---|
| End bp | 1790801 |
|---|
| Gene Length | 2406 bp |
|---|
| Protein Length | 801 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641705578 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_001832708 |
|---|
| Protein GI | 182678562 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.089404 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCCT CCGCTTGCAC TGACGATGGG CTGAGTAATA TGGATTCTTA TAGCCTATCT
GGCAGGTTAT GGCGGGTTTT TACGAAAAAT CGTAACCCTG CGATTATCGT TCAAGTCGCT
TTAATATTCG CTCTTGCCAC AATGCTGGCC GCTTGCAACG GACTCACAGA GTCCGAAGTC
AAGGCTTCCT TCGATAAGGC GAATGGCTTT GGCGGGCAGG ATCTGGCTGC GCGTTCCAGC
ACGAATGGAA ACGATACCTT TGGCGCTTCG CCGCTCCCCG CGGCTCCGGG ACCCATCATT
TCTCGCGGAG GAATCGCTGG CGCTGCCCAA GCCAATGCGA GCGATTTCGC GGAAAACGGC
GCGAGCGCGG TTACGGGTAA TGTCACGCTG ACGCCTGTGG AGAGCGCGGG CGATTATCAA
TTGAATTTCG AAAATGCCGA TGCCACGGCC GTCATCAAGA CCGTGCTGGG CGATGTCCTG
CAGGTCAATT ACGTCATCGA TCCGCGCGTG AATGGGCAAA TCAGCTTGAC CTCATCCCGG
CCGGTTCCGC GCAAATCCCT GGTGGGATTG TTGGAATCGG CCTTGAGCGG GATCAATGCC
GTCATCCTCA AGCAAAACGG CCTTTACCGG GTCGTGCCGG CCGGCGACGC CACCACGATT
CAGAATGTCC ACTACCATGA AGCGGGCGAA GGCTTTGGCG TGACGGTCAT CGGCATGAAG
AATGTCCCCG TCGCGCTGGC CGGACGCGTT CTCGAAGGAT TGGGGAGCCG TGGCGGCTCG
GTCCGGATGG AGGCCGATTC CAATCTTCTG ATCGTTCAGG GAACGGCCTC AGAGCGGCAG
GCCGCGCTCG ATGCGGCCTC CATGGTCGAT GTCGATTGGC TCAAAACCCG GTCCGTCGCC
ATTCTGCCTC TCACCAATTC GGCGCCGGAC ACGGTCATTG CCGAAGTCCA TCGTATCCTT
GGCACCGGCG AAGGCGGTTT GAGCAAGGAT ATTGTCCAGA TGCAGCCGAT CAACCGGCTG
AACGCGGTGC TGGCGGTTTC GCGAAACCAT GCCGCGATCG ATAAAGTGAC GCGGTGGGTC
GCCAAGTTGG ACAAGGCGGA TTACGCCGCC CTTGGCGTCA ACGTGTACAA GCTGCAATAT
GCCAATGCCA AAAACGTCGC GGCCATGCTG AACCAGATCT ATGGCGGCAG CGGCGGCCAA
ACCGGCCAGG ATCAGGATAA AGACGTTTTG CAACCCGGTG AGACGTCCAC CACGGGTGCG
CAGGCTGGAG GATTCGGGAC CGGCACAGGA AGGACCGGTG GGGGCTTTGG TCAAAGCAGC
GGGGTGTCCT CCGCAAACCC GAGTTCCTCG GGACAATCCT CTTTTGGATC GACACAGCTT
GCCAGCGCGT CATCCAATTC TTCTTTCGGG ACAAGCCCCT TCGGCAGCTT AAAGACAGGA
GCGGCCGGCC AGGGTGGATC GTCGACGGGG CAAGACGATT CGGGCGGGCT CGGCGGCGGC
GGTGCGGGCA AAGGGAAGAA CATACGCATT ACGCCCGATA TTTCGACCAA TTCGCTGCTG
ATCCACGCCA ATCGGCTCGA TTATCGGTTG ATCGAACACA CGATTCACGC CATGGACCGG
CCACCGGTCC AGGTTGAGAT CGAAGTGACC GTCGCCGAGG TCACCCTGAC GGATGCGCTC
AATTACGGCG TACAAGCCTA TCTCAACAGT TCCGCCGGCT CGTTGCAGAT GCTTGGAAGC
GCCGGTATTT CCAATGCCAG CATTCCCCTG GTCACGCCCC ATCCGGCGGT GAACCTGATG
ATCGGTCAGA TCGCCAATCC GCGTGTGGTG ATCAATGCTT TGTCGAATAT CACGGATGTC
AAGGTTCTCT CGACACCTTC GCTCGTCGTG CTCGACCGGC AGCCCGCTGT GCTGCAGGTG
GGTAATCAGG TGCCCATCCT CAGTCAGCAG GCAACCTCGA CACAAACGGC GAACCCGGCG
ATCGTCAACA GTGTCGATTA CAAGGATACC GGCATTATCC TGAATGTGCT GCCGCGTGTG
AATGCCAATG GCGTGGTGGC GCTGGATATC GAGCAGCAAA TCAGCGCGGT GACAAACCCC
GACCCGACGA ATTTGACACC GACGATTTCG CAACGGCGGG TTCGCAGCAC CATCGCCATT
CCCAATGGCC AGACGGTTCT GCTCGCCGGC CTGATCCAGG AAACAACCAA TGGAACCCGG
TCCGGCCTCC CCATCATCAG CAAGATCCGT TTCCTGAACG ATCTCGTCAC CAATCATAAT
TCATCTGACA GCCGCACCGA ATTGATCATG TTCATCAAGC CTCAGATCCT CCGCAATGGT
TTCGACTCGC AGCAGGTTTC CGAGGAATTT CGTGAGCGCT TGCAGATGAT GCGCAGTCAC
CCGTGA
|
|---|
| Protein sequence | MKASACTDDG LSNMDSYSLS GRLWRVFTKN RNPAIIVQVA LIFALATMLA ACNGLTESEV
KASFDKANGF GGQDLAARSS TNGNDTFGAS PLPAAPGPII SRGGIAGAAQ ANASDFAENG
ASAVTGNVTL TPVESAGDYQ LNFENADATA VIKTVLGDVL QVNYVIDPRV NGQISLTSSR
PVPRKSLVGL LESALSGINA VILKQNGLYR VVPAGDATTI QNVHYHEAGE GFGVTVIGMK
NVPVALAGRV LEGLGSRGGS VRMEADSNLL IVQGTASERQ AALDAASMVD VDWLKTRSVA
ILPLTNSAPD TVIAEVHRIL GTGEGGLSKD IVQMQPINRL NAVLAVSRNH AAIDKVTRWV
AKLDKADYAA LGVNVYKLQY ANAKNVAAML NQIYGGSGGQ TGQDQDKDVL QPGETSTTGA
QAGGFGTGTG RTGGGFGQSS GVSSANPSSS GQSSFGSTQL ASASSNSSFG TSPFGSLKTG
AAGQGGSSTG QDDSGGLGGG GAGKGKNIRI TPDISTNSLL IHANRLDYRL IEHTIHAMDR
PPVQVEIEVT VAEVTLTDAL NYGVQAYLNS SAGSLQMLGS AGISNASIPL VTPHPAVNLM
IGQIANPRVV INALSNITDV KVLSTPSLVV LDRQPAVLQV GNQVPILSQQ ATSTQTANPA
IVNSVDYKDT GIILNVLPRV NANGVVALDI EQQISAVTNP DPTNLTPTIS QRRVRSTIAI
PNGQTVLLAG LIQETTNGTR SGLPIISKIR FLNDLVTNHN SSDSRTELIM FIKPQILRNG
FDSQQVSEEF RERLQMMRSH P
|
|---|
| |