| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1516 |
|---|
| Symbol | |
|---|
| ID | 6200887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 1715484 |
|---|
| End bp | 1716710 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641705505 |
|---|
| Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
|---|
| Protein accession | YP_001832638 |
|---|
| Protein GI | 182678492 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.156448 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGAA ACAATGAAGT GGCGGTCCTT GATGTGGCGA TCCTGGTTGT CGCGGCAGGG
CGCGGTGTGC GGGCTGGCGG CGGCTTGCCC AAGCAATATC GCGAGGTCGC TGGCCGCAGC
GTCTTGGCCC ACACAATCCA AGCCTTGGCC GAGGCTTTGC CGGAGGCGCT CATTCTGCCG
GTCATCCATG CCGATGATGA AGCGCTTTTC GCCGCAGCGC GGGCCGAGGT TGCAAATGTC
GATTCGCGCC AGCTCGCCGC TCCCGTCTTT GGCGGTGCGA CGCGGCAGCA AAGCGTCAAG
GCCGGGCTGG AAGCTTTGGC AGCACGCGAT AAGGCACCCG ACATCGTTCT AATTCATGAT
GCGGCACGGC CTTTTTCGAG CCCGGCCCTC ATTCGCCGCG CGGTTGAGGC CGCGCAAAGC
CGAGGCGCGG CCATTCCGGG TGTTCCGCTG ACCGATACGG TGAAACAGAT CGATCTCCAG
GGTGAGGACG ATTCGCTGAT TATCGCCACA CCCGCCCGCC AGAGCCTGCG GGCGGTGCAG
ACACCCCAAG CTTTTCGTTT CGACCTGATT CTGTCAGGCC ATCGCCAAGC CGCCGAAGCT
GGCGCCGATG ATTTGACGGA TGATGCGGCC ATCATCGAAT GGATGGGACA GCAGGTCCAT
ATTTTCGAAG GGGATCCCGA CAATATGAAG ATCACCACTC CGCAGGATTT CGTCGCGGCT
GAAGCCCGCC TGCTCCGCGA TCTGCCCGAT ATTCGGACCG GCCAGGGCTA TGACGTCCAT
GCGCTTGGCG CAGGCGATCA TGTCTGGCTC GGCGGGGTGA AAATTCCCCA TGATCGCGGC
CTGATCGGCC ATTCTGACGC CGATGTCCTC TCCCATGCGA TCACCGATGC TTTGTTCGGT
GCCTTAGCGG AAGGGGATAT CGGCAGTCAT TTCCCCCCGT CCGATCCGCA ATGGAAAGGC
GCCGATTCGG CGATCTTCCT GCGCGAGGCG GCCAATCGCG TGCGCGAGCG CGGCGGCATG
ATTGCCCATA TCGATGCAAC AGTAGTCTGC GAAAGGCCGA AAGTCGGCCC GCATCGCGAC
GCCATCCGCG AACGTCTCGC CGAAATCACC GGCTGCCCGA TCGGGCGCGT TGCCGTCAAA
GCGACGACCT CGGAAAAGCT TGGTTTCACC GGCCGCGAGG AAGGCATCGC GGCTTTGGCG
CTCGCTACCG TCAGGCTGCC GCTTTAA
|
|---|
| Protein sequence | MHRNNEVAVL DVAILVVAAG RGVRAGGGLP KQYREVAGRS VLAHTIQALA EALPEALILP
VIHADDEALF AAARAEVANV DSRQLAAPVF GGATRQQSVK AGLEALAARD KAPDIVLIHD
AARPFSSPAL IRRAVEAAQS RGAAIPGVPL TDTVKQIDLQ GEDDSLIIAT PARQSLRAVQ
TPQAFRFDLI LSGHRQAAEA GADDLTDDAA IIEWMGQQVH IFEGDPDNMK ITTPQDFVAA
EARLLRDLPD IRTGQGYDVH ALGAGDHVWL GGVKIPHDRG LIGHSDADVL SHAITDALFG
ALAEGDIGSH FPPSDPQWKG ADSAIFLREA ANRVRERGGM IAHIDATVVC ERPKVGPHRD
AIRERLAEIT GCPIGRVAVK ATTSEKLGFT GREEGIAALA LATVRLPL
|
|---|
| |