| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1347 |
|---|
| Symbol | rpoB |
|---|
| ID | 6199230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 1555240 |
|---|
| End bp | 1559403 |
|---|
| Gene Length | 4164 bp |
|---|
| Protein Length | 1387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641705343 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001832476 |
|---|
| Protein GI | 182678330 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.039354 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAT CTTTGGCGCA GACATTCACC GGCCGCAAGC GTGTCCGTAA ATTCTTCGGC
CATATCCGCG AAGTTGCGGA AATGCCCAAT CTGATCGAGG TGCAGAAAGC CTCCTACGAT
CAATTCCTGC TCGTCGACGA GCCGAAGGGC GGCCGACCGG ACGAAGGCTT GCAATCGGTT
TTTAAATCGG TCTTTCCCAT TTCCGATTTC TCCGGCACGG CTTTGCTCGA ATTCGTCAAA
TATGAATTCG AACTGCCGAA ATATGATGTC GATGAGTGCC GTCAGCGCGG CATGACCTTC
GCCGCGCCGC TGAAGGTTAC CTTGCGCCTG ATCGTCTTTG ATGTCGACCC CGATACGGGA
GCGAAATCGG TCAAGGACAT CAAGGAGCAG GATGTCTATA TGGGCGATAT GCCCCTAATG
ACGATGAATG GTACGTTCAT TGTCAATGGG ACGGAGCGCG TGATCGTCTC GCAGATGCAT
CGTTCGCCGG GCGTTTTCTT CGATCACGAT AAAGGCAAAA GCCATTCTTC CGGCAAACTC
CTGTTTGCCG CCCGCATCAT CCCTTATCGC GGTTCCTGGC TCGATATCGA ATTCGATGCC
AAGGACATCG TCTATGCGCG TATCGATCGC CGCCGCAAAA TTCCGGCGAC ATCGGTGCTT
TATGCGCTGG GCATGGATGG TGAGGAAATT CTCTCCACTT TCTACAAGAC CATCGTCTAT
ACGCGCGATA AGGATGGCTG GCGCATTCCC TTCGACGCAG AGCGCATGAA GGGCATGAAG
GCGGCGATCG ATCTGATCGA TGCGGAAAGC GGCGAGGTCG TGCTGGAGGC GGGCAAGAAG
CTCACCGTGC GCACGGCGCG GCAATTGGCG GAGCGCGGCC TCAAATTCAT CAAGGCACAG
GACGAGGATC TGCACGGTCA ATATATCGCC AGCGATCTCT ATAATCCGCA GACGGGTGAG
ATCTTCGCCG AGGCCGGCGA GGAGATCAGT GCGAAAACAC TGACGACCCT TGTCGATTCC
GGTTTCGAAG AGATCCCGGT TCTCGATATC GACCATATCA ATATCGGACC CTATATCCGC
AACACCTTGG CGGTCGACAA GAACAATTCG CGCGAAGACG CTTTGTTCGA CATCTATCGC
GTGATGCGTC CTGGCGAGCC GCCGACGCTC GAGACTGCGG AAGCGATGTT TCATTCCCTG
TTCTTCGATC CCGAGCGCTA TGATCTCTCG GCGGTCGGGC GCGTGAAGAT GAACATGCGC
ATGGATCTCG ACGCGGCCGA TACGGTGCGT ATTCTCCGTA AAGCCGATAT TGTTGCCGTC
ATGCGCGCGC TCGTGGATCT GCGCGATGGA CGTGGCGAAA TCGATGATAT CGACCATCTC
GGCAATCGCC GAGTCCGCTC GGTCGGCGAA TTGATGGAGA ACCAATATCG CCTCGGCCTG
CTGCGCATGG AACGGGCCAT CAAGGAACGG ATGTCCTCGG TCGATATCGA CACGGTCATG
CCGCAGGATC TGATCAATGC GAAACCGGCG GCGGCCTCCG TCCGCGAATT CTTCGGTTCC
TCGCAATTGT CGCAGTTCAT GGACCAGACC AATCCTCTGT CCGAGATCAC GCATAAACGG
CGCCTCTCGG CCTTGGGACC GGGCGGTCTG ACGCGTGAGC GCGCGGGCTT CGAAGTGCGC
GACGTGCATC CGACCCATTA TGGCCGTATC TGTCCGATCG AGACGCCGGA AGGCCCGAAT
ATCGGTCTTA TCAACTCGCT CGCGACCTTC GCGCGTGTCA ATAAATACGG GTTTATCGAG
GCGCCTTATC GCCGGGTCAG GGATAATCAC GTCACCGATG ACGTCGTCTA TCTTTCGGCG
ATGGAAGAGA GCAAATATTA CGTCGCCCAG GCCGATGCCA AGGTTGATGC GGATCGTGGC
CTCGTCGAGG ATCTGATCGT CTGCCGTCAT GCCGGCGATG TGATCATGGT ACCGCGCGAG
CGTGTCGACT TCATGGATGT GTCGCCGAAA CAGCTCGTCT CGGTCGCCGC GGCCTTGATC
CCGTTCCTTG AGAACGATGA CGCCAACCGC GCGCTGATGG GCTCGAACAT GCAGCGCCAG
GCTGTGCCTC TGGTGAAAGC CGATGCGCCG CTGGTTGGGA CCGGTATGGA AGCGGTTGTG
GCACGCGATT CCGGGGCGGC CATTGCCGCG CGGCGCACGG GCTATATCGA CCAGATCGAT
GCGACCCGTA TCGTCATTCG CGCCACGGAA GAGACCGATG CCGGCAAGCC GGGTGTCGAT
ATCTACCGGC TGATGAAGTT CCAGCGTTCG AACCAATCGA CCTGCGTCAA CCAGAAGCCT
TTGGTCCGCG TCGGCGATTT CGTGCGCAAG GGCGATATTA TCGCCGATGG TCCCTCGACC
GATCTGGGTG ATCTGGCGCT CGGCCGCAAT GTGCTCGTCG CCTTCATGCC CTGGAACGGA
TATAATTTCG AGGACTCGAT CCTGCTCAAC GAGCGGATCG TCAAGGATGA CGTGTTCACT
TCGATCCATA TTGATGAATT CGAAGTGATG GCACGCGATA CGAAGCTCGG CCCGGAGGAA
ATCACTCGCG ATATTCCGAA TGTTTCGGAA GAGGCTTTGA AGAATCTCGA CGAGGCCGGC
ATCGTCTATA TCGGTGCCGA GGTTCAGGCG GGCGATATTC TCGTCGGCAA GATCACGCCG
AAGGGCGAAA GCCCGATGAC GCCGGAAGAA AAGCTGCTGC GCGCCATTTT CGGTGAGAAG
GCCTCTGACG TTCGCGACAC GTCCCTGCGT GTGCCTCCGG GCGTGCAAGG GACGATCGTC
GAAGTTCGTG TCTTCAACAG GCACGGCGTC GACAAGGACG AACGAGCTCA AGCGATCGAG
CGCGAGGAAA TTGAGCGTCT CGCGAAGGAC CGTGACGACG AACTCGCGAT CCTCGACCGC
AACGTCTATA CGCGCCTCAT TGATCTTCTG GATGGCAAGA AGGCGATTGC CGGCCCCAAG
GGCTTCAAGA AGGAGACGGT GCTGTCGCGC TCGGTGATCG AGGAATATCC TCGTTCTCAA
TGGTGGACGT TCGCCATCGA AAGCGATCAG CTCATGGCCG AGATCGAAGC CATGCGCAAG
CAATATGACG AGGCCAAAAA AGGACTGGAA AACCGCTTTC TCGACAAGGT CGAAAAGCTC
CAGCGCGGTG ACGAACTGCC GCCTGGCGTT ATGAAAATGG TCAAGGTCTT TGTCGCCATC
AAGCGCAAGA TCCAGCCCGG CGACAAAATG GCGGGCCGTC ATGGCAACAA GGGTGTCGTC
TCCAAGATCG TGCCGCAGGA GGACATGCCC TTCCTGGCCG ACGGTCAGCC GGTCGATATC
GTGCTCAATC CGCTCGGCGT GCCTTCGCGC ATGAATGTCG GGCAGATTCT CGAGACGCAT
CTCGGCTGGG CTTGCGCAGG GCTTGGCAAG CAGGTGAGCG AGGCGGTCAA TGCCTATCTC
AGGCAGCAGG ATACGCAGCC GATCCGCGAC AAGCTGATCG AGATCTATGG TGAAGGTCAA
CGGGAGCAGA TCAGCGCTCT CGATGAAGAG ACATTGGTCG AGGTCGGTGA AAATCTGCGC
CGCGGTGTTC CTATTGCCAC GCCTGTGTTC GATGGCGCGC GTGAGAAGGA TATCGTTGCC
ATGCTCGAGG AGGCGGGGCT CGATCATTCC GGTCAGGTCA CGCTTTACGA TGGCCGATCT
GGCGAGGCCT TCGACCGTAA GGTGACGGTC GGCTACATTT ATATGTTGAA GCTGCATCAT
CTCGTCGATG ACAAGATCCA TGCGCGTTCG ATCGGTCCGT ACAGCCTCGT GACGCAACAG
CCATTGGGCG GCAAAGCGCA GTTCGGTGGC CAGCGCTTCG GCGAAATGGA AGTCTGGGCG
CTCGAAGCTT ATGGTGCGGC CTATACGCTG CAGGAAATGC TGACCGTGAA GTCGGACGAC
GTCGCGGGTC GTACCAAGGT CTATGAATCG ATCGTGCGCG GTGATGATGC TTTCGAATCC
GGTATTCCGG AAAGCTTCAA CGTGCTGGTC AAGGAAATGC GTTCGCTCGG CCTCAATGTC
GAATTGAATA TGGCTCCAAA ATTGACCGAT CAGCAGCAAC AACAGCCGTC GCCGGAACAA
CCGCCGGCTG AAGCCGCCGA ATAA
|
|---|
| Protein sequence | MAQSLAQTFT GRKRVRKFFG HIREVAEMPN LIEVQKASYD QFLLVDEPKG GRPDEGLQSV
FKSVFPISDF SGTALLEFVK YEFELPKYDV DECRQRGMTF AAPLKVTLRL IVFDVDPDTG
AKSVKDIKEQ DVYMGDMPLM TMNGTFIVNG TERVIVSQMH RSPGVFFDHD KGKSHSSGKL
LFAARIIPYR GSWLDIEFDA KDIVYARIDR RRKIPATSVL YALGMDGEEI LSTFYKTIVY
TRDKDGWRIP FDAERMKGMK AAIDLIDAES GEVVLEAGKK LTVRTARQLA ERGLKFIKAQ
DEDLHGQYIA SDLYNPQTGE IFAEAGEEIS AKTLTTLVDS GFEEIPVLDI DHINIGPYIR
NTLAVDKNNS REDALFDIYR VMRPGEPPTL ETAEAMFHSL FFDPERYDLS AVGRVKMNMR
MDLDAADTVR ILRKADIVAV MRALVDLRDG RGEIDDIDHL GNRRVRSVGE LMENQYRLGL
LRMERAIKER MSSVDIDTVM PQDLINAKPA AASVREFFGS SQLSQFMDQT NPLSEITHKR
RLSALGPGGL TRERAGFEVR DVHPTHYGRI CPIETPEGPN IGLINSLATF ARVNKYGFIE
APYRRVRDNH VTDDVVYLSA MEESKYYVAQ ADAKVDADRG LVEDLIVCRH AGDVIMVPRE
RVDFMDVSPK QLVSVAAALI PFLENDDANR ALMGSNMQRQ AVPLVKADAP LVGTGMEAVV
ARDSGAAIAA RRTGYIDQID ATRIVIRATE ETDAGKPGVD IYRLMKFQRS NQSTCVNQKP
LVRVGDFVRK GDIIADGPST DLGDLALGRN VLVAFMPWNG YNFEDSILLN ERIVKDDVFT
SIHIDEFEVM ARDTKLGPEE ITRDIPNVSE EALKNLDEAG IVYIGAEVQA GDILVGKITP
KGESPMTPEE KLLRAIFGEK ASDVRDTSLR VPPGVQGTIV EVRVFNRHGV DKDERAQAIE
REEIERLAKD RDDELAILDR NVYTRLIDLL DGKKAIAGPK GFKKETVLSR SVIEEYPRSQ
WWTFAIESDQ LMAEIEAMRK QYDEAKKGLE NRFLDKVEKL QRGDELPPGV MKMVKVFVAI
KRKIQPGDKM AGRHGNKGVV SKIVPQEDMP FLADGQPVDI VLNPLGVPSR MNVGQILETH
LGWACAGLGK QVSEAVNAYL RQQDTQPIRD KLIEIYGEGQ REQISALDEE TLVEVGENLR
RGVPIATPVF DGAREKDIVA MLEEAGLDHS GQVTLYDGRS GEAFDRKVTV GYIYMLKLHH
LVDDKIHARS IGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD
VAGRTKVYES IVRGDDAFES GIPESFNVLV KEMRSLGLNV ELNMAPKLTD QQQQQPSPEQ
PPAEAAE
|
|---|
| |