| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_0894 |
|---|
| Symbol | |
|---|
| ID | 6198242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 1017855 |
|---|
| End bp | 1021376 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641704891 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_001832032 |
|---|
| Protein GI | 182677886 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.180496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.440454 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGATT TCAAACGCGC CGTCGCCGAA CTCGCTAAGG GCGGCTCCCT GACTTTGGCT
TCCGTGGCCG ATGGCTACGA CGCCTTTTGC CTCGCCGATC TGATTCATGC CTGTGCCCGT
GCCGGCGAGG AACGCTCCGT GGTGCTGGTG CATGTGGCGC GTGACAGCAC GCGGGCGCGG
GCCTTTGGCG AGGCTCTGGC CTTTGCGGCG CCGGATGTCG AAATCCTCGA CCTGCCGTCC
TGGGATTGCC AGCCTTATGA CCGCGTCTCG CCAAACGCGG CGATTGCCGC CAAACGGATG
ATGGTGCTGG CGCGTCTCGC CCGTTCGCGC TCCTCCCTGG AACGGCCGCG CATTCTCTCG
ACCACCGTCA ATGCCTTGGT CCAGCGCTTG CCGCCCTTGC GCTTCATCGC CGCCAATACT
TTTTCAGCCG CGCCCGGCAA TGCCGTCGCG CTCGATGGCC TTGCGGCCTG GCTCGAGACC
AATGGCTTTG CACGGTCCTC GACCGTGCGG GATACCGGCG AATATGCAGT GCGCGGCGGC
ATTGTCGATC TTTACGCGCC CGGCATGGCG CAGCCGGTCC GGCTCGATTT CTTTGGCGAT
ACGCTGGAAT CCATCCGTTC CTTCGATCCG GAAACCCAGC GCACCATTGG CCAATTGCGC
GCGCTCGATC TTGTGCCGAT GAGCGAGGTG CAACTGACCA CCGAGACGAT CCGCCATTTC
CGCCAGGCCT ATGTCGCGCG TTTCAATGCG CAGACGCGCG GCGATACGCT TTATGAGACG
ATCAGCGAGG GACGAAGGCA CCCAGGCTGC GAACATTGGC TGCCTCTGTT CTACGACCAT
CTCGATACAT TGTTCGATTA TGTCGGCGGC GCGCCTTTCG TACTCGATCC GCAGGCCGAG
GAAGCGGCGA AACAACGGCT CGCGCAGATC AAGGATTATT ATGAGGCCCG CAAATCGGCC
TATGACGCCG ACCCGGCCCA TGTGGCCTAT AAGCCTCTGC CGCCCGATGC ACTTTATCAG
ACGCCGGAGC AATGGGGCAA AACGCTGTCC CTCACCAGCC TCGTGCGCAT TTCGCCCTTC
GCCGTGCCGC CGGATTCTTC GCGCGGCCCT GTCGTTGATC TGAATTCCAA ACCCGGACGC
AGTTTCGCCG CCGAGCGGGC CGATCCCGAG GCCAATGTGT TCGAGGCCGC GCTGACCCAT
GTGCGGGCCC TGCAAGGCGC GGGCAAGCGC GTGATCCTCG CCGCCTGGAC GGATGGCTCG
CGTGAGCGGC TTGCCCATGT CATGGCCGAT CATGGCCTCA AGGATCAGGA AACAATTTCC
TCCTTCACCC AGGCGCAGGC GCTGAAACCC TCCACCGTGG CGCTCGGCGT CATCGGCCTG
GAACAGGGTT TTGAGGCGGA AGGGCTTGCC GTCGTCGGCG AGCAGGACAT TCTGGGCGAC
AGGATCGTGC AGACGCGCCG CAAAGTCCGC CGCGCCCAGG ATTTCTTGAG CGAGGTCGCC
TCGTTGCAGG CGGGCGATCT GGTGGTCCAT GTCGAACATG GCATCGGCCG GTTCATTGGC
TTGCAGACCA TCGAGGCGGC GGGCGTGCGC CATGATTGCC TGGAACTGCA TTATGCCGAA
GGCACAAAGC TTTTCCTGCC CGTCGAAAAT CTCGAATTAC TTTCGCGCTA TGGCTCGGAA
GAATCCGATG TCCCGCTTGA CCGTCTCGGC GGTGGCGCCT GGCAGAAGCG CAAGGCGCGG
ATGCGCCGGC ATATTCTCGA AATGGCCTCT GGTCTCATCA AGGTTGCCGC CGCGCGCGAG
ACAAGGGAAG CGCCGAAACT GGTGCCACCC GAAGGGCTCT ATGCCGAATT CTGTTCAGGT
TTCCCTTACG AGGAAACCGA GGACCAGCAG GCCACCATCG ACTCGGTTCT GGAGGATCTT
TCCTCGGGCA AGCCGATGGA CCGCCTTGTC TGCGGAGATG TCGGTTTCGG CAAGACGGAA
GTGGCGCTCC GCGCCGCCTT CGACACGGCG ATCAATGGCA AACAAGTCGC CGTCATCGTG
CCGACGACTC TCTTGGCCCG CCAGCATTAC AAGAATTTTT CAGCCCGTTT CGCGCATCTG
CCGGTCACAG TCGCGCAAAT GTCGCGCATG GTCTCCGCCG CCGATCTCAA AGCCGCCAAG
GCAGGCATTT CCTCGGGCAA TGTCGATATT ATCGTCGGCA CTCATGCCGT GCTGGGCAAG
GGGATCACGT TCAAGGATCT CGGCCTCGTC ATCATCGACG AGGAACAGCA TTTTGGGGTC
AAGCACAAGG AACGCCTAAA GGAACTCCGC GCCGAAGTGC ATGTGCTGAC CCTTTCGGCA
ACGCCGATCC CGCGCACGCT GCAGCTCGCC ATGACCGGCG TGCGTGATCT CTCGATCATC
GCCACGCCGC CGGTCGATCG TCTGGCCGTG CGTACCTTCA TTTCGCCCTT CGATGATCTT
TTGGTCCGCG AAGCTCTGTT GCGCGAGCGT TATCGCGGCG GGCAGAGTTT TTATGTCGCC
CCGCGCATCG AAGATCTCGA GGATGTCGCG ACATACCTGC GCACCCATGT GCCGGAGGTC
AAATTCGTGG TCGCGCATGG ACAAATGGCG GCGACCGAGC TCGAAGATAA AATGGCCGCC
TTCTATGAGG GCAAATATGA TGTGCTGCTC TCAACCGCCA TTGTCGAATC CGGTCTCGAT
ATTCCAACCG CTAACACTTT GATCGTGCAT CGCGCCGATA TGTTCGGCCT TGCCGCGCTC
TATCAATTGC GTGGCCGCGT TGGCCGCTCG AAAATCCGCG CTTACGCGCT CTTCACTGTG
CCGCCGAATA AGACCCTGAC GCCACAGGCC GAGCGGCGGC TGAAAGTGCT GTCCTCGCTC
GACACGTTGG GTGCGGGCTT CCAGCTTGCC AGCCACGATC TCGATATTCG CGGCGCCGGC
AATCTGCTCG GCGATGCGCA ATCGGGCCAT ATCAAGGAAG TCGGCTATGA ACTCTATCAG
CAAATGTTGC AGGAGGCGGT CGAGGCCCTG AAGTCGGGCA TAGAGGCGCC GGTCGAGGAA
GCCTGGTCGC CGACCATCAC GCTCGGCACG CCGGTCACGA TTCCAGAAGA TTATGTGCCC
GATCTGCAAT TGCGTCTGAC GCTCTATCGC CGCCTCTCGA CCATCGAAAG CGAGGCGGAA
ATCGAAAGTT TCGCCGCCGA AATGATCGAC CGTTTTGGGC CCATGCCGAA GGAGGTCGAG
CAATTGATGC AGCTCGTCGC CATCAAACTA TTGTGCCGCA AGGCGCATGT GGAAAAAGTG
GATGCGGGCC CCAAGGGCGT CATCATCGGC TTCCGCGACA ATGCTTTCGC CAATCCGCAA
GGGCTTGTTC GCTATGTCGC GCAGCAAGGG TCTGAGGCCA AGGTGCGCGC GGATATGAAG
ATCGTCTTCT CCCGCGATTT CGCCAATCCC AATGTCAGGC TGGAAGGCAC GAAACAGCTC
GTGCGCACAC TCGCGGCCAT AGCCATGAAA CAGGCGGCAT GA
|
|---|
| Protein sequence | MTDFKRAVAE LAKGGSLTLA SVADGYDAFC LADLIHACAR AGEERSVVLV HVARDSTRAR
AFGEALAFAA PDVEILDLPS WDCQPYDRVS PNAAIAAKRM MVLARLARSR SSLERPRILS
TTVNALVQRL PPLRFIAANT FSAAPGNAVA LDGLAAWLET NGFARSSTVR DTGEYAVRGG
IVDLYAPGMA QPVRLDFFGD TLESIRSFDP ETQRTIGQLR ALDLVPMSEV QLTTETIRHF
RQAYVARFNA QTRGDTLYET ISEGRRHPGC EHWLPLFYDH LDTLFDYVGG APFVLDPQAE
EAAKQRLAQI KDYYEARKSA YDADPAHVAY KPLPPDALYQ TPEQWGKTLS LTSLVRISPF
AVPPDSSRGP VVDLNSKPGR SFAAERADPE ANVFEAALTH VRALQGAGKR VILAAWTDGS
RERLAHVMAD HGLKDQETIS SFTQAQALKP STVALGVIGL EQGFEAEGLA VVGEQDILGD
RIVQTRRKVR RAQDFLSEVA SLQAGDLVVH VEHGIGRFIG LQTIEAAGVR HDCLELHYAE
GTKLFLPVEN LELLSRYGSE ESDVPLDRLG GGAWQKRKAR MRRHILEMAS GLIKVAAARE
TREAPKLVPP EGLYAEFCSG FPYEETEDQQ ATIDSVLEDL SSGKPMDRLV CGDVGFGKTE
VALRAAFDTA INGKQVAVIV PTTLLARQHY KNFSARFAHL PVTVAQMSRM VSAADLKAAK
AGISSGNVDI IVGTHAVLGK GITFKDLGLV IIDEEQHFGV KHKERLKELR AEVHVLTLSA
TPIPRTLQLA MTGVRDLSII ATPPVDRLAV RTFISPFDDL LVREALLRER YRGGQSFYVA
PRIEDLEDVA TYLRTHVPEV KFVVAHGQMA ATELEDKMAA FYEGKYDVLL STAIVESGLD
IPTANTLIVH RADMFGLAAL YQLRGRVGRS KIRAYALFTV PPNKTLTPQA ERRLKVLSSL
DTLGAGFQLA SHDLDIRGAG NLLGDAQSGH IKEVGYELYQ QMLQEAVEAL KSGIEAPVEE
AWSPTITLGT PVTIPEDYVP DLQLRLTLYR RLSTIESEAE IESFAAEMID RFGPMPKEVE
QLMQLVAIKL LCRKAHVEKV DAGPKGVIIG FRDNAFANPQ GLVRYVAQQG SEAKVRADMK
IVFSRDFANP NVRLEGTKQL VRTLAAIAMK QAA
|
|---|
| |