Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bind_0857 |
Symbol | |
ID | 6198841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
Kingdom | Bacteria |
Replicon accession | NC_010581 |
Strand | + |
Start bp | 976521 |
End bp | 978239 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641704855 |
Product | TPR repeat-containing protein |
Protein accession | YP_001831996 |
Protein GI | 182677850 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.6877 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCCGTCG CCTGTGCTCT GTTGGTTCCA GCCCCCTTGG CGCTGGCACG GGCCCGTGAA AGCCTGGCCA TAGCGACACC TTTCGAGGTC GGTGACAGCC CGATCGGCAA TTATCTCGCT GCCTATGTCG CAGGCATCGA TAAGGACACG CTCGCGGCAG CCACCTATTT TCGCGAAGCC TTGCGTTATG ATCCGCATAA TTCGGCTTTG ATCGAGCGGG CTTTTGTCGC CGCGATTTCG AACGGCAACA TGCAGGATGC GTTTGGTTTC GCGGATCGTC TGCTCGCGCG TGATCCCGGT AACGGCCTTG CCCATCTCGC CTTGGGCGTC AAGGCGATCA AGCAGCATCA ATATGCGGCC GCGCGCAATC ATTTCGCGCG GGGCGGCGCT GGGCACGAAC GCGATATTAC CGCGACGCTT CTTGCGGCCT GGACCTATGC AGGCAGTGGA GAATACAAGC GCGGGCTTGA ACTGGTCGAT CGCCTGCATG ATGAAAGCTT CGGCGTGTTT CGCGATTTCC ACGGCGGCTT GATCGCCGAT GTCGCGCATA ATCCAACCGA AGCGGCGCGT CGGCTGAAGG CCTCCTATGA TACCGACAAG AACACTTTGC GGCTTGTCGA TGTCTATGCG CGATTCCTGG CGCTGCATGG CCGCCGTGAC GAAGCGATCA AGGTCTATGA GGCCTTCGAC GAGATTCTGC CCAATCATCC GATCATCAGC GCCGCGCTTG CCACGTTGAA GAGCGGCAAG ACGCTCGAGT CGCCGGTGCG CACACCGGAG GAGGGCGCTG CCGAAGTGCT CTATGGCCTG GGTGCCGCCG GCAGCCGGCA AGGCGACGAA CTGGCCGCGA TGATCTATCT TCGTCTATCG CTGTTTCTCG CGCCCGAGAA CAGCCTCGCC ATCATTACGC TTGGCGATAT TTATGAACGC ATCAAGCAGA ACGAGCGGGC GATCGACGTC TATGAAACCG TGCCCGACGA TGATCCCTTG CGGATTACTG CCGATATCCA GTCCGGACAG ATTCTCGAAG CCCTCGGCCG CACCGAGGAG GCGAACAAAT ATCTGAAACG AATCGTCGAG GAACATCCGA AGGATAGCGA TGCTTTATCG GCGCTCGGCA ATCTGCAGCG CGCCCATAAG CAATATGCCG AGGCCATCGA AACCTATACT CAGGCGCTCG CCGCCACGAG CAAGCCGGAA AAGGCCAATT GGCCGCTCTA TTATTTCCGT GGCATTTCCT ATGAGCGTAA CAAGCAATGG CCGCAGGCGG AGGCCGATTT CCGCCGCGCC CTGGCTTTGT TCCCGGACCA GCCTCTGGTG CTGAATTATC TTGGTTATAG CTGGGTCGAT CAGGGACTCA ATCTCGACGA GGCCTTTGCC ATGCTGCACA AGGCCGTGGA ATTGCGGCCG ACCGACGGTT ATATCGTCGA CAGTCTTGGC TGGGCCAATT ACCGGCTGGG CCGCTATGAC GAGGCGGTCA AGGAACTCGA GCGGGCCATT GATCTGAAGC CTTCCGATCC GGTCATCAAT GATCATTTGG GTGATGCCTA TTGGCGGGTC GGGCGCAAGC TCGAAGCTCA TTTCCAATGG AACCATGCGC GTGATCTTGG GCCCGAGCCC GAGGACAAGG ACAAGATCCT GGCCAAGATT GAGCACGGGC TTGATGACGA AGAAAAGCCC GCCGCCGCCG AGGCTCGCCC CGCCAAAAAC GGGGGATGA
|
Protein sequence | MAVACALLVP APLALARARE SLAIATPFEV GDSPIGNYLA AYVAGIDKDT LAAATYFREA LRYDPHNSAL IERAFVAAIS NGNMQDAFGF ADRLLARDPG NGLAHLALGV KAIKQHQYAA ARNHFARGGA GHERDITATL LAAWTYAGSG EYKRGLELVD RLHDESFGVF RDFHGGLIAD VAHNPTEAAR RLKASYDTDK NTLRLVDVYA RFLALHGRRD EAIKVYEAFD EILPNHPIIS AALATLKSGK TLESPVRTPE EGAAEVLYGL GAAGSRQGDE LAAMIYLRLS LFLAPENSLA IITLGDIYER IKQNERAIDV YETVPDDDPL RITADIQSGQ ILEALGRTEE ANKYLKRIVE EHPKDSDALS ALGNLQRAHK QYAEAIETYT QALAATSKPE KANWPLYYFR GISYERNKQW PQAEADFRRA LALFPDQPLV LNYLGYSWVD QGLNLDEAFA MLHKAVELRP TDGYIVDSLG WANYRLGRYD EAVKELERAI DLKPSDPVIN DHLGDAYWRV GRKLEAHFQW NHARDLGPEP EDKDKILAKI EHGLDDEEKP AAAEARPAKN GG
|
| |