| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_0567 |
|---|
| Symbol | |
|---|
| ID | 6199155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 629939 |
|---|
| End bp | 631519 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641704558 |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_001831708 |
|---|
| Protein GI | 182677562 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTTT CAACCAAACT CGTCATGCGT CAGGGACAGT CCCTGGTGAT GACGCCGCAG
CTTTTGCAGG CCATCAAGCT GCTCCAATTT TCCAATCTGG AACTGGCTGC CTTCGTCGAG
GACGAACTCG AACGCAATCC CCTCCTCGAA CGGGCGGAGG AAGCGCACGA GCCCTACGAG
CCCATGCTTT CCACCGCTTA TGAGGCAAAG GATGGCCATG ATTTCGGCGA TCCGGAAGGC
CATGCCTTCA ACGAATCGAG CGAGGCCGAC TGGAATTCCG AGTCTTTTGC CACCGATCGC
GGCTCCATGG AAGCAAGCCT CGGCACCGAA TTGTCCAACA CCTTCGATGA TGACCGCGCG
CCGACCCCCG GCGACCATCA TGACGCCGGC CTCGACGGTT ATGGTCTTGA GGGAGCCGGT
CTTTCCGCCA CGTCCTGGTC AGGCACATCC GGCCTCAATG GCGATGGCGA GGCGACCAAT
CTTGAAGCCT ATGTCGCCGC CGAAGCGACG CTCAAGGATC ATCTGGCCGG CCAATTGGCC
ATCGCGACCT CCGATCCGGT CGACCGGCTG ATCGGCAATG CCTTGATCGA TTCACTCGAT
GAAGTCGGCT ATCTCACCGA TCCCGTCGAG GATATTGCCC AGCGCCTCGG CACCTCCGTG
CAACGGGTCG AACGCATGCT CGGTGTCGTT CAGACCTTCG ATCCCTCGGG GGTCGGCGCC
CGCAACCTTT CCGAATGCCT TGCCATTCAA TTGCGCGAGC GCGACCGCCT CGATCCGGCC
ATGCAGGCGT TGCTCAATCA TCTCGGGCTT CTCGCCAAGC GCGATTTTGC GGCCCTCCGC
AAGATTTGTC AGGTCGATGA AGAAGATATT CTCGACATGC TGAACGAGAT CCGGCGGCTC
GATCCGAAAC CCGGCCGTGC CTTTGGTTCA AGTTCGATCC AGCCGGTTGT TCCCGATGTC
ATCGTGCGGC CACTCCCGGA TGGCTCCTGG CATGTCGAGC TCAATGCCGA TGTCCTGCCG
CGCATTCTCG TCAACCACAC TTATGCGGCG CGCGTTTCCA AGGTCAAAGC CAAGGAAGCC
GACAAGGCGT TCATGTCGAA TTGCCTGCAA ACCGCTAATT GGCTGACGAA GAGCCTCGAA
CAGCGCGCCC GCACCATTCT GAAGGTTTCG AGCGAAATCG TCCGGCAGCA GGATGCCTTT
TTCGCCAAGG GCGTTGAACA TTTGCGGCCT TTGAACCTCA AAACCATCGC GGATGCGATC
GGCATGCACG AATCGACCGT CTCGCGCGTG ACCTCCAACA AATATATGAC CACGCCGCGT
GGTCTGTTCG AACTCAAATA TTTCTTCACC GCCTCGATCA ACGCTCATAA TGGCGGAGAA
GCCCATTCAG CCGAATCCGT GCGCTTCCGC ATCAAGCAGA TGATCGATCA AGAAAGCGCC
AAGGACATTC TCTCCGACGA TGCGATCGTC GCGCGGCTGA AGGAAGCCAA TATCGACATC
GCCCGGCGCA CCGTGGCCAA ATATCGCGAC AGCCTCAAAA TTCCATCCTC TGTCGAAAGG
CGCCGTGAGA AGGCGTTGTA A
|
|---|
| Protein sequence | MALSTKLVMR QGQSLVMTPQ LLQAIKLLQF SNLELAAFVE DELERNPLLE RAEEAHEPYE
PMLSTAYEAK DGHDFGDPEG HAFNESSEAD WNSESFATDR GSMEASLGTE LSNTFDDDRA
PTPGDHHDAG LDGYGLEGAG LSATSWSGTS GLNGDGEATN LEAYVAAEAT LKDHLAGQLA
IATSDPVDRL IGNALIDSLD EVGYLTDPVE DIAQRLGTSV QRVERMLGVV QTFDPSGVGA
RNLSECLAIQ LRERDRLDPA MQALLNHLGL LAKRDFAALR KICQVDEEDI LDMLNEIRRL
DPKPGRAFGS SSIQPVVPDV IVRPLPDGSW HVELNADVLP RILVNHTYAA RVSKVKAKEA
DKAFMSNCLQ TANWLTKSLE QRARTILKVS SEIVRQQDAF FAKGVEHLRP LNLKTIADAI
GMHESTVSRV TSNKYMTTPR GLFELKYFFT ASINAHNGGE AHSAESVRFR IKQMIDQESA
KDILSDDAIV ARLKEANIDI ARRTVAKYRD SLKIPSSVER RREKAL
|
|---|
| |