| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_0108 |
|---|
| Symbol | |
|---|
| ID | 6200710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 123668 |
|---|
| End bp | 124402 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641704105 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001831256 |
|---|
| Protein GI | 182677110 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.243352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0665959 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAGGA CAATCATTCA TTCCAGTATC GTAATCATGG CGAGTTCAGT TGCCGCGCTT
GCGGCGGATC TTCCGAATCG TGCCGCGCCG CCCACCGTGC CCTATCTTCC GCCATCGCCG
GCCTTTTCTT GGACTGGCGT TTATCTCGGG GGACAGATTG GTTATCAATT TGGACGGGAT
TCTATCACGG CTCCGGGTCT TTTTTCAGTA GGACATTCAC CGAACGGGGT CGTCGGTGGC
GCGCATATCG GCTTTAATTA TCAAGTCAGC CAATTCATCG TGGGCTTTGA AGGTGACGTG
AACGGATCGA GCTATTCTGG ATCTGTCTTC AACCCCGTCT TCCGAACACA ATTGACATCC
CGTATCCCAG TCGATGGTTC CCTTCGCGGC CGCATCGGGG CCGCTTGGGA TCGTGTCCTC
GTCTACGCAA CCGGCGGGGC GGCTTTCGCA TCGATTAAAC ATGGATATAT CGGTTCTTCG
CTCGTTCCCG GTTCCGCGAC CCTTACAAAT GATCGAGTCG GTTGGACAGT CGGAGGCGGC
GTCGAATATG CCATGACTGA CAATTGGTCA GTACGTGTCG ATTATCGCTA TACGGATTAT
GGGAACATCT CCGATTTTCC TGGCACTATC ACGGTTCCAC GCATACATCA CGAAACGAAT
AATCGCGTGC AGGCCGGTTT CAGCTATAAG TTCGATACGT CTCCGCCCAC CGTCCCGATC
GTCGCTAAAT ACTGA
|
|---|
| Protein sequence | MLRTIIHSSI VIMASSVAAL AADLPNRAAP PTVPYLPPSP AFSWTGVYLG GQIGYQFGRD
SITAPGLFSV GHSPNGVVGG AHIGFNYQVS QFIVGFEGDV NGSSYSGSVF NPVFRTQLTS
RIPVDGSLRG RIGAAWDRVL VYATGGAAFA SIKHGYIGSS LVPGSATLTN DRVGWTVGGG
VEYAMTDNWS VRVDYRYTDY GNISDFPGTI TVPRIHHETN NRVQAGFSYK FDTSPPTVPI
VAKY
|
|---|
| |