| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2248 |
|---|
| Symbol | |
|---|
| ID | 6204180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010579 |
|---|
| Strand | - |
|---|
| Start bp | 21982 |
|---|
| End bp | 23916 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641703802 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_001830954 |
|---|
| Protein GI | 182682756 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAGC CAAACAATGC TGTCGGTCCA CAGGTTCGAG GGGGACAGCG CAAAAAGAAC
AAGCTGGTTC CTGCACTTGC TCTTACTTCG ATGGCGACTG GCTTGCAGGT CGCAACGCAA
TACTTCGCGC ACACATTCAA CTATCAATCA ACACTTGGTG GGAATTACAA CCACATATAC
GCCCCTTGGT CGATTCTTTC GTGGTATGCC AAGTGGGGCG ATCAGTTTCA TAACTATTTT
TTTGCCGCTG GCAACATTGG CATGATGGTT ACTGCCGGTG GTCTCATCGG TACAGCACTG
ATAAAAACGT TCGAAATCAA CTCAGTCAAA GCCAACGAGT ATCTTCATGG ATCGGCCTGC
TGGGCGAGTA AGAAGGACAT CGAGCAGTCA GGTTTGCTCG GTAACGACGA AGGCGTATAC
GTAGGTGCCT GGGAGGACAA GGATGGAAGG CTTCATTATC TACGTCATAA CGGTCCCGAG
CATGTTCTGA CCTACGCCCC CACTCGTTCT GGTAAAGGGG TCGGTCTCGT TGTCCCCACA
TTGCTGTCGT GGCCGCACAG CGTCGTCGTT ACTGACCTTA AGGGTGAGCT ATGGGCGATG
ACTGCTGGCT GGCGTCAGAA GCACGCCAAG AACAAGGTGA TTCGCTTTGA ACCAGCCACG
CTTAACGGAT CGGTGTGCTG GAATCCGCTC GATGAAATTC GTATCGGGAC GGAATACGAA
GTTGGCGATG TGCAGAACCT CGCAACCCTC ATCGTTGATC CGAATGGCAA AGGTCTCGAA
TCGCACTGGC AGAAAACGTC ACAAGCCCTA CTTGTTGGCG TGATCTTGCA CGTTCTTTAC
AAGAGGAAGA ACGAAGGTTT TCCGGCGACG TTGTCATACG TGGATCACAT CATGTCAGAC
CCTAACCGTA ACGTGGCCGA GTTGTGGATG GAGATGACGC AGTACGGCCA TATCAACGGT
GAAAATCATC CGGCTGTCGG TTCAGCGGGT CGAGACATGA TGGACCGGCC CGAGGAAGAG
GCTGGTTCTG TCTTGTCTAC GGCGAAGTCC TACATTGCTC TTTATCGTGA TCCGGTCGTC
GCGAGAAACG TCAGTAAGTC CGATTTTTGC ATCAAAGACT TGATGAACCA CGATGATCCG
GTCAGTTTGT ATATCGTGAC TCAGCCGAAC GACAAGGGCC GATTGCGGCC TCTAGTCCGT
GTGATGCTGA ATATGATCGT GCGGCTGCTT GCCGACAAAA TGAAGTTCGA ACGTGTACCC
ACAGAGCTGT CTTGGTGGCG TCAAATACTT ACCAAACTTG GATTCAATCA AGTTGCTGAT
TTCCACGTGC GTTCAAAGAA GTCATACAAG CATCGTCTGT TGGGAATGAT TGATGAGTTT
CCGAGTCTCG GTAAGCTCGA AATCATGCAA GAGTCTCTTG CCTTCGTGGC AGGCTACGGC
ATTAAGTTCT ATCTCATTTG TCAAGACTTG AACCAACTTA AATCGCGTGA GACCGGCTAC
GGCCCCGACG AAACGATCAC GTCGAACTGC CATGTACAGA ATGCTTACCC ACCTAATCGT
GTTGAGACGG CTGAGCATCT TTCAAAACTT ACAGGGCAAA CCACTGTACT CAAGGAACAG
ATCACGACGA GCGGCAAGCG GGCGACTCCA ATTCTCGGAC AGCTCTCCCG CACGATTCAG
GAGGTGCAGC GTCCCTTACT CACTGTAGAC GAGTGCTTGC GTATGCCTGG GCCAAAGAAG
GATGCCGAAG GACAAATCAC TGAGGCTGGG GACATGGTTG TATACGTTGC TGGTTATCCG
GCTATTTACG GAAAGCAGCC ACTCTACTTT CAAGATCCGA TTTTCATCGC ACGCGCAGCA
GTGCCTGAGC CGAAGACCAG CGACACACTG CGTCTTGTGC ATGAGCCAAC CCTGCTGGAT
GAGATCAAAA TATGA
|
|---|
| Protein sequence | MRKPNNAVGP QVRGGQRKKN KLVPALALTS MATGLQVATQ YFAHTFNYQS TLGGNYNHIY
APWSILSWYA KWGDQFHNYF FAAGNIGMMV TAGGLIGTAL IKTFEINSVK ANEYLHGSAC
WASKKDIEQS GLLGNDEGVY VGAWEDKDGR LHYLRHNGPE HVLTYAPTRS GKGVGLVVPT
LLSWPHSVVV TDLKGELWAM TAGWRQKHAK NKVIRFEPAT LNGSVCWNPL DEIRIGTEYE
VGDVQNLATL IVDPNGKGLE SHWQKTSQAL LVGVILHVLY KRKNEGFPAT LSYVDHIMSD
PNRNVAELWM EMTQYGHING ENHPAVGSAG RDMMDRPEEE AGSVLSTAKS YIALYRDPVV
ARNVSKSDFC IKDLMNHDDP VSLYIVTQPN DKGRLRPLVR VMLNMIVRLL ADKMKFERVP
TELSWWRQIL TKLGFNQVAD FHVRSKKSYK HRLLGMIDEF PSLGKLEIMQ ESLAFVAGYG
IKFYLICQDL NQLKSRETGY GPDETITSNC HVQNAYPPNR VETAEHLSKL TGQTTVLKEQ
ITTSGKRATP ILGQLSRTIQ EVQRPLLTVD ECLRMPGPKK DAEGQITEAG DMVVYVAGYP
AIYGKQPLYF QDPIFIARAA VPEPKTSDTL RLVHEPTLLD EIKI
|
|---|
| |